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WormBase Tree Display for Gene: WBGene00037154

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Name Class

WBGene00037154SMapS_parentSequencecb25.fpc4069c
IdentityVersion2
NameCGC_nameCbr-haly-1From_analysisInferred_from_orthology
Sequence_nameCBG17560
Molecular_nameCBG17560
CBG17560.1
CBP45866
Other_nameCBG_17560Accession_evidenceNDBHE600959
Public_nameCbr-haly-1
DB_infoDatabaseNDBlocus_tagCBG_17560
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:06WBPerson1971EventImportedInitial conversion from brigace
212 Apr 2011 11:53:07WBPerson2970Name_changeCGC_nameCbr-haly-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhaly
RNASeq_FPKMWBls:000000220.8529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
22.84From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
40.4365From_analysisRNASeq.briggsae.WBls:0000002.control_mean
77.6166From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
19.373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
21.8465From_analysisRNASeq.briggsae.WBls:0000002.control_median
35.1706From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000031.40154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.03045From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
4.65936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
3.58262From_analysisRNASeq.briggsae.WBls:0000003.control_mean
4.68695From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000433.0868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
34.5019From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
35.917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
30.8634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
32.7187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
33.2072From_analysisRNASeq.briggsae.WBls:0000004.control_mean
33.4502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002712.1905From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
20.5584From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.00419From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
45.4806From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
14.5005From_analysisRNASeq.briggsae.WBls:0000027.control_median
16.8104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
19.6214From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003525.5207From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.7204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
17.4115From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
22.4562From_analysisRNASeq.briggsae.WBls:0000038.control_median
27.5009From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
38.2202From_analysisRNASeq.briggsae.WBls:0000038.control_mean
93.2479From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004122.5386From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
22.6262From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
23.7131From_analysisRNASeq.briggsae.WBls:0000041.control_median
24.7999From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
31.1898From_analysisRNASeq.briggsae.WBls:0000041.control_mean
54.7945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
35.9683From_analysisRNASeq.briggsae.WBls:0000041.control_median
36.8157From_analysisRNASeq.briggsae.WBls:0000041.control_mean
47.1368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
48.9984From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006310.3065From_analysisRNASeq.briggsae.WBls:0000063.control_mean
11.841From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
12.5624From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
13.207From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
13.9222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
11.6789From_analysisRNASeq.briggsae.WBls:0000063.control_mean
12.8847From_analysisRNASeq.briggsae.WBls:0000063.control_median
18.541From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010122.6262From_analysisRNASeq.briggsae.total_over_all_stages.control_median
27.7094From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
22.7331From_analysisRNASeq.briggsae.total_over_all_stages.control_median
27.7935From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00140580
00140581
00140582
00140583
Ortholog (26)
Structured_descriptionAutomated_descriptionPredicted to enable histidine ammonia-lyase activity. Predicted to be involved in histidine catabolic process. Predicted to be located in cytoplasm. Is an ortholog of C. elegans haly-1. In C. elegans, haly-1 is involved in histidine catabolic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG17560
Corresponding_CDS_historyCBG17560:bp194
CBG17560:bp255
Corresponding_transcriptCBG17560.1
Other_sequence (79)
Experimental_infoExpr_patternExpr1065691
Microarray_resultsGPL8303_CB6_WBGene00037154_A
GPL8303_CB6_WBGene00037154_B
GPL14143_CBG17560_1765-1824_0.649_128_B
GPL14143_CBG17560_1830-1889_0.775_23_A
GPL14143_CBG17560_1949-2008_0.609_179_C
MethodGene