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WormBase Tree Display for Gene: WBGene00139615

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Name Class

WBGene00139615SMapS_parentSequenceCbre_Contig726
IdentityVersion2
NameCGC_nameCbn-ceh-6.1From_analysisInferred_from_orthology
Sequence_nameCBN00890
Molecular_nameCBN00890
CBN00890.1
CN21647
Other_nameCBN00890
Cbn-ceh-6From_analysisInferred_from_orthology
Public_nameCbn-ceh-6.1
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-ceh-6
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbn-ceh-6.1
Other_nameCbn-ceh-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classceh
RNASeq_FPKMWBls:00000020.187963From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
0.65496From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
0.757987From_analysisRNASeq.brenneri.WBls:0000002.control_median
0.861015From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
1.16543From_analysisRNASeq.brenneri.WBls:0000002.control_mean
1.31464From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
1.62421From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
2.81522From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
4.19632From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040.692365From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
1.38473From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
4.64291From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
4.94984From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
5.43431From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
5.9706From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
6.41295From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:00000380.416893From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
0.806642From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
1.19639From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:00000410.088518From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
0.189385From_analysisRNASeq.brenneri.WBls:0000041.control_median
0.290252From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
0.491955From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
0.520623From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
0.711269From_analysisRNASeq.brenneri.WBls:0000041.control_mean
0.742703From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
1.77354From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
1.91032From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
2.69381From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
2.86858From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
WBls:00001010.416893From_analysisRNASeq.brenneri.total_over_all_stages.control_median
0.839763From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00202827
00202828
00202829
OrthologWBGene00000431Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00033471Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00064253Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00090604Pristionchus pacificusFrom_analysisInparanoid_8
CBOVI.g10178Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8887Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3815Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1687Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2258Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8296Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g8297Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2285Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10631Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4446Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g9361Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00242.g7709Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ceh-6Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20425Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00204.g6981Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07034Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_002653Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05660Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_10316400Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00133419Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00225010Brugia malayiFrom_analysisWormBase-Compara
chrI_pilon.g1602Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00217701Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00236822Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00286844Trichuris murisFrom_analysisWormBase-Compara
WBGene00295957Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00158628Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00146096Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00156712Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans ceh-6. In C. elegans, ceh-6 is involved in transdifferentiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN00890
Corresponding_transcriptCBN00890.1
Other_sequenceCRC06041_1
Tcir_isotig27799
Acan_isotig09977
Oden_isotig19268
Experimental_infoMicroarray_resultsGPL14142_CBN00890_658-717_0.906_8_A
GPL14142_CBN00890_751-810_0.868_28_B
MethodGene