WormBase Tree Display for Gene: WBGene00038604

WBGene00038604 SMap: S_parent: Sequence: cb25.fpc4126
  Identity: Version: 2
    Name: CGC_name: Cbr-unc-42 From_analysis: Inferred_from_orthology
      Sequence_name: CBG19368
      Molecular_name: CBG19368a
        CBG19368a.1
        CBP45336
        CBG19368b
        CBP42942
        CBG19368c
        CBP45401
        CBG19368d
        CBP42706
        CBG19368b.1
        CBG19368c.1
        CBG19368d.1
      Other_name: CBG_19368 Accession_evidence: NDB HE601047
      Public_name: Cbr-unc-42
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:08 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 15 Oct 2007 15:19:45 WBPerson2970 Name_change: CGC_name: Cbr-unc-42
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    Allele: WBVar00026597
    RNASeq_FPKM: WBls:0000002 0.243104 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        2.70883 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        3.28995 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        4.59345 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.20943 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        1.76653 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        2.08398 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 1.53465 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        2.33391 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        3.13317 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        3.04777 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        4.4755 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 39.2705 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        42.1078 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        44.9452 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        34.1226 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        37.8435 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        38.1156 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        38.8595 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
      WBls:0000024 14.158 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        14.3738 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        16.0912 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        18.0244 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        18.652 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        6.66065 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        7.27499 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        2.0191 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
      WBls:0000027 0.241596 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        3.01613 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        8.80679 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        4.52419 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        4.69786 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        9.74307 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 5.05459 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.314214 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        2.10979 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        2.25535 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        2.40091 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        2.77309 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        6.26746 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 0.041026 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.06196 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.087104 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.112249 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.319301 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        1.06197 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.428146 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.50453 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.744043 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        1.00593 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.551659 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0.554306 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.01029 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        1.20958 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.651323 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.780975 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        1.13641 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 1.53465 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        6.33618 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        1.82222 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        8.18803 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00142114
    Ortholog: WBGene00006778 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00062879 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00146038 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00135228 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00145034 Caenorhabditis brenneri From_analysis: WormBase-Compara
      CBOVI.g1096 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4624 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g9632 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4818 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18360 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g3352 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8199 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7966 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g12452 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g23776 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_01040.g15468 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-unc-42 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g17652 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00614.g13578 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09640 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016951 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00121 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g6476 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50256400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00228192 Brugia malayi From_analysis: WormBase-Compara
      chrV_pilon.g15335 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243065 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00249156 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00102515 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00257909 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00294422 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296487 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00024188 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024297 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024319 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025006 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027146 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030291 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030749 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033797 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034255 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034700 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035242 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035388 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036280 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036289 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036290 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037052 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037726 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040880 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042823 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00270809 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity. Is an ortholog of C. elegans unc-42. In C. elegans, unc-42 is involved in several processes, including larval locomotory behavior; neuron differentiation; and positive regulation of transcription by RNA polymerase II. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG19368a
      CBG19368b
      CBG19368c
      CBG19368d
    Corresponding_CDS_history: CBG19368:bp194
      CBG19368:bp255
    Corresponding_transcript: CBG19368a.1
      CBG19368b.1
      CBG19368c.1
      CBG19368d.1
    Other_sequence: MC01312
      SRC04407_1
      Oden_isotig07668
      Oden_isotig22109
      Oden_isotig07669
      Acan_isotig02876
      FK803896.1
      Oden_isotig07664
      Oden_isotig07663
      Oden_isotig07670
      Oden_isotig07667
      FK799890.1
      MCC00061_1
      Acan_isotig02875
      Oden_isotig07662
      SR02181
      Oden_isotig07666
      Dviv_isotig10702
      Dviv_isotig30379
      AE03832
      Oden_isotig07665
      JI178167.1
      AYC02578_1
  Experimental_info: Expr_pattern: Expr1066958
    Microarray_results: GPL8303_CB6_WBGene00038604_A
      GPL14143_CBG19368_300-359_0.914_12_A
      GPL14143_CBG19368_591-650_0.823_33_C
      GPL14143_CBG19368_728-787_0.937_4_B
  Method: Gene