WormBase Tree Display for Gene: WBGene00040880

WBGene00040880 SMap: S_parent: Sequence: cb25.fpc4321
  Identity: Version: 2
    Name: CGC_name: Cbr-ceh-17 From_analysis: Inferred_from_orthology
      Sequence_name: CBG22279
      Molecular_name: CBG22279
        CBG22279.1
        CBP05324
      Other_name: CBG_22279 Accession_evidence: NDB HE601428
      Public_name: Cbr-ceh-17
    DB_info: Database: NDB locus_tag CBG_22279
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:10 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-ceh-17
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ceh
    RNASeq_FPKM: WBls:0000002 0.161021 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.962777 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        1.10005 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        1.62726 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.769273 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.914401 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.934662 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 0.839785 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        1.0037 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        1.16762 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        1.16674 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        1.49281 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 5.5191 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        5.61693 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        5.71477 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        5.21165 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        6.24239 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        6.32263 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        8.44381 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.497939 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.70228 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0.791536 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.546416 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.691848 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        0.697064 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 1.04309 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.114039 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.255375 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        0.272606 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.289838 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0.533018 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        1.47282 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 0.038757 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.181842 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.229641 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.257607 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.333371 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.364596 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.299557 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.348983 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.377106 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        0.501669 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.04902 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.245098 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.056626 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.094659 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 0.364596 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        1.07494 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.697064 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        1.44944 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00144243
    Ortholog (21)
    Paralog (20)
    Structured_description: Automated_description: Predicted to enable DNA binding activity. Is an ortholog of C. elegans ceh-17. In C. elegans, ceh-17 is involved in axon guidance; positive regulation of transcription by RNA polymerase II; and regulation of axon extension. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG22279
    Corresponding_CDS_history: CBG22279:bp194
    Corresponding_transcript: CBG22279.1
    Other_sequence (16)
  Experimental_info: Expr_pattern: Expr1050748
    Microarray_results: GPL8303_CB6_WBGene00040880_A
      GPL8303_CB6_WBGene00040880_B
      GPL14143_CBG22279_311-370_0.518_132_C
      GPL14143_CBG22279_483-542_0.950_2_B
      GPL14143_CBG22279_602-661_0.939_4_A
  Method: Gene