WormBase Tree Display for Gene: WBGene00038467

expand all nodes | collapse all nodes | view schema

WBGene00038467	SMap	S_parent	Sequence	cb25.fpc4126
	Identity	Version	4
		Name	CGC_name	Cbr-spl-2	From_analysis	Inferred_from_orthology
			Sequence_name	CBG19207
			Molecular_name	CBG19207
				CBG19207.1
				CBP45006
			Other_name	CBG_19207	Accession_evidence	NDB	HE601047
				Cbr-tag-38
			Public_name	Cbr-spl-2
		DB_info	Database	NDB	locus_tag	CBG_19207
		Species	Caenorhabditis briggsae
		History	Version_change	1	08 Sep 2004 10:52:08	WBPerson1971	Event	Imported	Initial conversion from brigace
				2	20 Sep 2007 17:07:04	WBPerson2970	Name_change	CGC_name	Cbr-tag-38
				3	03 Jul 2018 11:45:27	WBPerson1983	Name_change	CGC_name	Retired non-elegans tag gene names
				4	08 Feb 2019 15:42:26	WBPerson1983	Name_change	CGC_name	Cbr-spl-2
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	spl
		Allele	WBVar00127292
			WBVar00138937
		RNASeq_FPKM	WBls:0000002	0.62229	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
				0.844563	From_analysis	RNASeq.briggsae.WBls:0000002.control_mean
				0.937483	From_analysis	RNASeq.briggsae.WBls:0000002.control_median
						RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
				0.973916	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
				0.358904	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
				0.723148	From_analysis	RNASeq.briggsae.WBls:0000002.control_mean
				0.779886	From_analysis	RNASeq.briggsae.WBls:0000002.control_median
			WBls:0000003	0.151955	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
				0.196782	From_analysis	RNASeq.briggsae.WBls:0000003.control_mean
						RNASeq.briggsae.WBls:0000003.control_median
				0.241609	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
						RNASeq.briggsae.WBls:0000003.control_median
				0.233847	From_analysis	RNASeq.briggsae.WBls:0000003.control_mean
				0.307978	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
			WBls:0000004	1.06802	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
				1.34377	From_analysis	RNASeq.briggsae.WBls:0000004.control_mean
						RNASeq.briggsae.WBls:0000004.control_median
				1.61952	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
				0.632539	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
				1.15507	From_analysis	RNASeq.briggsae.WBls:0000004.control_mean
				1.22662	From_analysis	RNASeq.briggsae.WBls:0000004.control_median
						RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
				1.22867	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
			WBls:0000024	0.117782	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
				0.231475	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
				0.476417	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
				0.552002	From_analysis	RNASeq.briggsae.WBls:0000024.control_median
				0.627587	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
				0.671385	From_analysis	RNASeq.briggsae.WBls:0000024.control_mean
				1.35006	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
				0	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
						RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
						RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
						RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
						RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
			WBls:0000027	0.33141	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
				1.1816	From_analysis	RNASeq.briggsae.WBls:0000027.control_median
						RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
				2.00073	From_analysis	RNASeq.briggsae.WBls:0000027.control_mean
				4.48918	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
				0.082623	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
				0.756505	From_analysis	RNASeq.briggsae.WBls:0000027.control_median
				1.5212	From_analysis	RNASeq.briggsae.WBls:0000027.control_mean
			WBls:0000035	0.207615	From_analysis	RNASeq.briggsae.WBls:0000035.control_mean
						RNASeq.briggsae.WBls:0000035.control_median
						RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
			WBls:0000038	0.090793	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
				0.152462	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
				0.347665	From_analysis	RNASeq.briggsae.WBls:0000038.control_median
				0.542869	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
				1.32947	From_analysis	RNASeq.briggsae.WBls:0000038.control_mean
				4.53176	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
			WBls:0000041	0.216679	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
				0.452964	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
				0.589561	From_analysis	RNASeq.briggsae.WBls:0000041.control_median
				0.726158	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
				13.3662	From_analysis	RNASeq.briggsae.WBls:0000041.control_mean
				52.069	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
				1.23453	From_analysis	RNASeq.briggsae.WBls:0000041.control_median
				15.5177	From_analysis	RNASeq.briggsae.WBls:0000041.control_mean
				1.7429	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
				37.8988	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
			WBls:0000063	0.795766	From_analysis	RNASeq.briggsae.WBls:0000063.control_mean
				1.07551	From_analysis	RNASeq.briggsae.WBls:0000063.control_median
						RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
				1.30539	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
				1.59793	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
				0	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
						RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
				0.393624	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
				0.728742	From_analysis	RNASeq.briggsae.WBls:0000063.control_mean
				0.734567	From_analysis	RNASeq.briggsae.WBls:0000063.control_median
			WBls:0000101	0.62229	From_analysis	RNASeq.briggsae.total_over_all_stages.control_median
				2.66454	From_analysis	RNASeq.briggsae.total_over_all_stages.control_mean
				0.624938	From_analysis	RNASeq.briggsae.total_over_all_stages.control_median
				3.18801	From_analysis	RNASeq.briggsae.total_over_all_stages.control_mean
		GO_annotation	00141950
			00141951
			00141952
		Ortholog (35)
		Paralog	WBGene00024028	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00028506	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00030647	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00031909	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00034615	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00035897	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00036903	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00037453	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00042089	Caenorhabditis briggsae	From_analysis	WormBase-Compara
		Structured_description	Automated_description	Predicted to enable carbon-carbon lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in carboxylic acid metabolic process. Is an ortholog of C. elegans spl-2. In C. elegans, spl-2 is involved in defense response to Gram-positive bacterium.	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Molecular_info	Corresponding_CDS	CBG19207
		Corresponding_CDS_history	CBG19207:bp194
			CBG19207:bp255
		Corresponding_transcript	CBG19207.1
		Other_sequence	CR11485
			CRC10100_1
			Oden_isotig09668
			CR11484
	Experimental_info	Expr_pattern	Expr1053819
		Microarray_results	GPL8303_CB6_WBGene00038467_A
			GPL8303_CB6_WBGene00038467_B
			GPL14143_CBG19207_1039-1098_0.890_22_B
			GPL14143_CBG19207_1065-1124_0.929_8_C
			GPL14143_CBG19207_1288-1347_0.915_12_A
	Method	Gene