WormBase Tree Display for Gene: WBGene00024028

WBGene00024028 SMap: S_parent: Sequence: cb25.fpc0011c
  Identity: Version: 2
    Name: CGC_name: Cbr-tdc-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG00668
      Molecular_name: CBG00668
        CBG00668.1
        CBP00146
      Other_name: CBG_00668 Accession_evidence: NDB HE600999
      Public_name: Cbr-tdc-1
    DB_info: Database: NDB locus_tag CBG_00668
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:53 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-tdc-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tdc
    Allele: WBVar00141415
    RNASeq_FPKM: WBls:0000002 29.413 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        50.9941 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        57.9762 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        65.5932 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        57.7132 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        61.7847 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        77.8704 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 16.8403 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        20.9685 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        25.0966 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        20.6745 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        20.8705 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 6.61331 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        7.78652 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        8.95973 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        6.78108 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        7.66215 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        7.98261 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        9.8968 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 1.40374 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        18.0651 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        4.30142 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        7.92342 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        5.58353 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        6.86563 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        7.65897 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 26.0011 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 10.1888 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        10.3282 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        12.3205 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        12.6939 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        14.3128 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        15.9458 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 109.135 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        113.046 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        116.685 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        120.323 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        124.706 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        78.4654 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        103.641 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        105.923 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        86.508 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        98.7998 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 44.3547 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        46.4109 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        48.9625 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        49.8761 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        50.5576 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        53.6133 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        50.2169 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        51.4091 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        63.6418 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 25.0966 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        36.2579 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        22.8855 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        37.6363 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00127362
      00127363
      00127364
      00127365
      00127366
    Contained_in_operon: CBOPA0033
    Ortholog (30)
    Paralog: WBGene00028506 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030647 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031909 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034615 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035897 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036903 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037453 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038467 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042089 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in amino acid metabolic process. Is an ortholog of C. elegans tdc-1. In C. elegans, tdc-1 is involved in octopamine biosynthetic process. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG00668
    Corresponding_transcript: CBG00668.1
    Other_sequence (33)
  Experimental_info: Expr_pattern: Expr1063431
    Microarray_results: GPL8303_CB6_WBGene00024028_A
      GPL8303_CB6_WBGene00024028_B
      GPL8303_CB6_WBGene00024028_C
      GPL14143_CBG00668_1329-1388_0.671_88_C
      GPL14143_CBG00668_1407-1466_0.771_24_A
      GPL14143_CBG00668_1614-1673_0.770_25_B
  Method: Gene