WormBase Tree Display for Gene: WBGene00018013
expand all nodes | collapse all nodes | view schema
| WBGene00018013 | SMap | S_parent | Sequence | F33E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | phf-10 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F33E11.6 | ||||||||
| Molecular_name | F33E11.6a | ||||||||
| F33E11.6a.1 | |||||||||
| CE39928 | |||||||||
| F33E11.6b | |||||||||
| CE39929 | |||||||||
| F33E11.6c | |||||||||
| CE28295 | |||||||||
| F33E11.6b.1 | |||||||||
| F33E11.6c.1 | |||||||||
| Other_name | CELE_F33E11.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | phf-10 | ||||||||
| DB_info | Database | AceView | gene | 5A784 | |||||
| WormQTL | gene | WBGene00018013 | |||||||
| WormFlux | gene | WBGene00018013 | |||||||
| NDB | locus_tag | CELE_F33E11.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018013|UniProtKB=Q2A950 | |||||||
| family | PTHR10615 | ||||||||
| NCBI | gene | 3565141 | |||||||
| RefSeq | protein | NM_001047647.6 | |||||||
| NM_001047648.4 | |||||||||
| NM_001313168.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF318971 | |||||||
| TrEMBL | UniProtAcc | A0A0K3AS00 | |||||||
| Q2A950 | |||||||||
| Q2A949 | |||||||||
| UniProt_GCRP | UniProtAcc | Q2A950 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 02 Mar 2006 09:46:46 | WBPerson1867 | Event | Acquires_merge | WBGene00018012 | ||||
| 3 | 14 Oct 2011 15:24:19 | WBPerson2970 | Name_change | CGC_name | phf-10 | ||||
| Acquires_merge | WBGene00018012 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | phf | ||||||||
| Allele (133) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000891 | ||||||||
| 00000892 | |||||||||
| 00000893 | |||||||||
| 00080250 | |||||||||
| Contained_in_operon | CEOP5012 | ||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00007029 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007914 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016200 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00045419 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010537 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable metal ion binding activity. Predicted to be involved in nervous system development. Predicted to be located in nucleus. Used to study alcohol use disorder. Is an ortholog of human PHF10 (PHD finger protein 10). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00046494 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 May 2019 00:00:00 | ||||||||
| Models_disease_in_annotation | WBDOannot00000671 | ||||||||
| Molecular_info | Corresponding_CDS | F33E11.6a | |||||||
| F33E11.6b | |||||||||
| F33E11.6c | |||||||||
| Corresponding_CDS_history | F33E11.6:wp155 | ||||||||
| Corresponding_transcript | F33E11.6a.1 | ||||||||
| F33E11.6b.1 | |||||||||
| F33E11.6c.1 | |||||||||
| Other_sequence | Tcir_isotig01329 | ||||||||
| Dviv_isotig07152 | |||||||||
| Dviv_isotig07150 | |||||||||
| Hbac_isotig07261 | |||||||||
| ES561532.1 | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00046213 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046214 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116274 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116275 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016210 | ||||||||
| Expr1037760 | |||||||||
| Expr1150100 | |||||||||
| Expr2014890 | |||||||||
| Expr2033125 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (142) | |||||||||
| Interaction | WBInteraction000388307 | ||||||||
| WBInteraction000388308 | |||||||||
| WBInteraction000559252 | |||||||||
| WBInteraction000561251 | |||||||||
| WBInteraction000568762 | |||||||||
| WBInteraction000569737 | |||||||||
| WBInteraction000574915 | |||||||||
| Map_info | Map | V | Position | -20.0045 | |||||
| Positive | Positive_clone | F33E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00041771 | |||||||||
| WBPaper00046494 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062514 | |||||||||
| WBPaper00063737 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
