WormBase Tree Display for Gene: WBGene00017664
expand all nodes | collapse all nodes | view schema
| WBGene00017664 | SMap | S_parent | Sequence | F21D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | npax-1 | Paper_evidence | WBPaper00003599 | |||||
| Person_evidence | WBPerson260 | ||||||||
| Sequence_name | F21D12.5 | ||||||||
| Molecular_name | F21D12.5 | ||||||||
| F21D12.5.1 | |||||||||
| CE45541 | |||||||||
| Other_name | CELE_F21D12.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | npax-1 | ||||||||
| DB_info | Database | AceView | gene | 2H618 | |||||
| WormQTL | gene | WBGene00017664 | |||||||
| WormFlux | gene | WBGene00017664 | |||||||
| NDB | locus_tag | CELE_F21D12.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017664|UniProtKB=Q19677 | |||||||
| family | PTHR45636 | ||||||||
| NCBI | gene | 184779 | |||||||
| RefSeq | protein | NM_063132.3 | |||||||
| TREEFAM | TREEFAM_ID | TF319497 | |||||||
| TrEMBL | UniProtAcc | Q19677 | |||||||
| UniProt_GCRP | UniProtAcc | Q19677 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 May 2010 15:24:57 | WBPerson2970 | Name_change | CGC_name | npax-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npax | ||||||||
| Allele (36) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00065455 | ||||||||
| 00065456 | |||||||||
| 00065457 | |||||||||
| 00122986 | |||||||||
| 00122987 | |||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00003937 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00003939 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00006870 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00007496 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00011257 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00013147 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018591 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | npax-1 is a divergent Paired domain-only protein; it encodes only the first part of the Paired domain (the PAI subdomain) and an EH1 (octapeptide) motif; the Paired domain is a DNA-binding domain; the PAI subdomain is likely also DNA-binding; npax genes mostly diverged from complete Paired domain-only and/or Paired homeobox genes; no obvious orthologs are present in arthropods or vertebrates; npax-1 is expressed in the head neurons. | Paper_evidence | WBPaper00046864 | |||||
| WBPaper00003599 | |||||||||
| WBPaper00051112 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Expressed in head neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F21D12.5 | |||||||
| Corresponding_CDS_history | F21D12.5:wp222 | ||||||||
| Corresponding_transcript | F21D12.5.1 | ||||||||
| Other_sequence | OFC00519_1 | ||||||||
| MH03499 | |||||||||
| OF00799 | |||||||||
| Associated_feature | WBsf978492 | ||||||||
| WBsf988404 | |||||||||
| WBsf988405 | |||||||||
| WBsf988406 | |||||||||
| WBsf988407 | |||||||||
| WBsf988408 | |||||||||
| WBsf1012513 | |||||||||
| Transcription_factor | WBTranscriptionFactor000991 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00045189 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013669 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031214 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7514 | ||||||||
| Expr1019494 | |||||||||
| Expr1149129 | |||||||||
| Expr2014361 | |||||||||
| Expr2032602 | |||||||||
| Drives_construct | WBCnstr00012659 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (39) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | II | Position | 0.501595 | Error | 4.3e-05 | |||
| Positive | Positive_clone | F21D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003599 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
