WormBase Tree Display for Gene: WBGene00007496
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| WBGene00007496 | SMap | S_parent | Sequence | C09G9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | npax-4 | Paper_evidence | WBPaper00003599 | |||||
| Person_evidence | WBPerson260 | ||||||||
| Sequence_name | C09G9.7 | ||||||||
| Molecular_name | C09G9.7a | ||||||||
| C09G9.7a.1 | |||||||||
| CE40404 | |||||||||
| C09G9.7b | |||||||||
| CE47237 | |||||||||
| C09G9.7b.1 | |||||||||
| Other_name | CELE_C09G9.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | npax-4 | ||||||||
| DB_info | Database | AceView | gene | 4J642 | |||||
| WormQTL | gene | WBGene00007496 | |||||||
| WormFlux | gene | WBGene00007496 | |||||||
| NDB | locus_tag | CELE_C09G9.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007496|UniProtKB=Q17876 | |||||||
| family | PTHR45636 | ||||||||
| NCBI | gene | 182466 | |||||||
| RefSeq | protein | NM_001268416.3 | |||||||
| NM_001268417.2 | |||||||||
| TrEMBL | UniProtAcc | H9G2Q0 | |||||||
| Q17876 | |||||||||
| UniProt_GCRP | UniProtAcc | Q17876 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 May 2010 15:24:57 | WBPerson2970 | Name_change | CGC_name | npax-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npax | ||||||||
| Allele (39) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00059517 | ||||||||
| 00059518 | |||||||||
| 00059519 | |||||||||
| 00115599 | |||||||||
| 00115600 | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00003937 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00018591 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00017664 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00011257 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | npax-4 is a divergent Paired domain-only protein; it encodes only the first part of the Paired domain (the PAI subdomain) and an EH1 (octapeptide) motif; the Paired domain is a DNA-binding domain; the PAI subdomain is likely also DNA-binding; npax genes mostly diverged from complete Paired domain-only and/or Paired homeobox genes; no obvious orthologs are present in arthropods or vertebrates; npax-4 is involved in embryo development and lipid storage; npax-4 is expressed in the pseudocoelom and the body wall musculature. | Paper_evidence | WBPaper00005655 | |||||
| WBPaper00025054 | |||||||||
| WBPaper00029055 | |||||||||
| WBPaper00045974 | |||||||||
| WBPaper00046864 | |||||||||
| WBPaper00003599 | |||||||||
| WBPaper00051112 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Expressed in body wall musculature and pseudocoelom. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C09G9.7a | |||||||
| C09G9.7b | |||||||||
| Corresponding_CDS_history | C09G9.7:wp164 | ||||||||
| Corresponding_transcript | C09G9.7a.1 | ||||||||
| C09G9.7b.1 | |||||||||
| Associated_feature | WBsf978322 | ||||||||
| WBsf997301 | |||||||||
| WBsf997302 | |||||||||
| WBsf1017893 | |||||||||
| WBsf230486 | |||||||||
| Transcription_factor | WBTranscriptionFactor000955 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00040250 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00023935 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023647 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092958 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028747 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023042 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023135 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010557 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7428 | ||||||||
| Expr1018200 | |||||||||
| Expr1144319 | |||||||||
| Expr2014364 | |||||||||
| Expr2032605 | |||||||||
| Drives_construct | WBCnstr00012571 | ||||||||
| WBCnstr00033694 | |||||||||
| Construct_product | WBCnstr00017311 | ||||||||
| WBCnstr00033694 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (89) | |||||||||
| Interaction | WBInteraction000226046 | ||||||||
| WBInteraction000349789 | |||||||||
| WBInteraction000437237 | |||||||||
| WBInteraction000445250 | |||||||||
| Map_info | Map | IV | Position | 3.99433 | Error | 0.002002 | |||
| Positive | Positive_clone | C09G9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003599 | ||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
