WormBase Tree Display for Gene: WBGene00017406
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WBGene00017406 | SMap | S_parent | Sequence | F12E12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | sdz-12 | Paper_evidence | WBPaper00024645 | |||||
Person_evidence | WBPerson374 | ||||||||
Sequence_name | F12E12.5 | ||||||||
Molecular_name | F12E12.5 | ||||||||
F12E12.5.1 | |||||||||
CE20674 | |||||||||
Other_name | F12E12.e | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_F12E12.5 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | sdz-12 | ||||||||
DB_info | Database | AceView | gene | 2E20 | |||||
WormQTL | gene | WBGene00017406 | |||||||
WormFlux | gene | WBGene00017406 | |||||||
NDB | locus_tag | CELE_F12E12.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00017406|UniProtKB=Q9BLC4 | |||||||
family | PTHR24404 | ||||||||
NCBI | gene | 184388 | |||||||
RefSeq | protein | NM_062233.2 | |||||||
SwissProt | UniProtAcc | Q9BLC4 | |||||||
TREEFAM | TREEFAM_ID | TF317508 | |||||||
UniProt_GCRP | UniProtAcc | Q9BLC4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 19 Aug 2005 17:08:06 | WBPerson2970 | Name_change | CGC_name | sdz-12 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sdz | ||||||||
Allele (72) | |||||||||
Strain | WBStrain00037314 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00092054 | ||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00003002 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00003218 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00005008 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00009508 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00009834 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00016713 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00019960 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00001223 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00016154 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable metal ion binding activity. Expressed in several structures, including Z4.ap; dorsal uterine precursor; head muscle; head neurons; and ventral uterine precursor. Is an ortholog of human ZNF501 (zinc finger protein 501). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F12E12.5 | |||||||
Corresponding_transcript | F12E12.5.1 | ||||||||
Associated_feature | WBsf978776 | ||||||||
WBsf987359 | |||||||||
WBsf987360 | |||||||||
Transcription_factor | WBTranscriptionFactor000984 | ||||||||
Experimental_info | RNAi_result | WBRNAi00030855 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00044441 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00044440 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7501 | ||||||||
Expr8874 | |||||||||
Expr1017727 | |||||||||
Expr1037484 | |||||||||
Expr1148388 | |||||||||
Expr2015671 | |||||||||
Expr2033904 | |||||||||
Drives_construct | WBCnstr00005956 | ||||||||
WBCnstr00012646 | |||||||||
WBCnstr00027320 | |||||||||
Construct_product | WBCnstr00027320 | ||||||||
WBCnstr00038810 | |||||||||
Microarray_results (17) | |||||||||
Expression_cluster (59) | |||||||||
Interaction (20) | |||||||||
Map_info | Map | II | Position | -6.21817 | Error | 0.000202 | |||
Positive | Positive_clone | F12E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |