WormBase Tree Display for Gene: WBGene00001223
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| WBGene00001223 | Evidence | Paper_evidence | WBPaper00006002 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK616 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | ehn-3 | Person_evidence | WBPerson320 | |||||
| Sequence_name | ZK616.10 | ||||||||
| Molecular_name | ZK616.10a | ||||||||
| ZK616.10a.1 | |||||||||
| CE37599 | |||||||||
| ZK616.10b | |||||||||
| CE26343 | |||||||||
| ZK616.10c | |||||||||
| CE37600 | |||||||||
| ZK616.10b.1 | |||||||||
| ZK616.10c.1 | |||||||||
| Other_name | ZK616.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_ZK616.10 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | ehn-3 | ||||||||
| DB_info | Database | AceView | gene | 4G182 | |||||
| WormQTL | gene | WBGene00001223 | |||||||
| WormFlux | gene | WBGene00001223 | |||||||
| NDB | locus_tag | CELE_ZK616.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001223|UniProtKB=Q65XX7 | |||||||
| family | PTHR24404 | ||||||||
| NCBI | gene | 191363 | |||||||
| RefSeq | protein | NM_001028444.3 | |||||||
| NM_001028445.1 | |||||||||
| NM_001028446.1 | |||||||||
| SwissProt | UniProtAcc | Q65XX7 | |||||||
| UniProt_GCRP | UniProtAcc | Q65XX7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 14 Sep 2004 09:45:48 | WBPerson1971 | Event | Acquires_merge | WBGene00022779 | ||||
| Acquires_merge | WBGene00022779 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ehn | ||||||||
| Allele (32) | |||||||||
| Complementation_data | nDF41 fails to complement q689 and q766 | ||||||||
| q689 fails to complement q766 | |||||||||
| Strain | WBStrain00022608 | ||||||||
| WBStrain00022609 | |||||||||
| WBStrain00022627 | |||||||||
| WBStrain00031311 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00081640 | ||||||||
| 00081641 | |||||||||
| 00081642 | |||||||||
| 00081643 | |||||||||
| 00081644 | |||||||||
| 00081645 | |||||||||
| 00081646 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00003002 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00016154 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017406 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019960 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | ehn-3 encodes a nuclear Zn-finger protein with no obvious orthologs;EHN-3 controls development of somatic gonadal precursors (SGPs), andenables both HND-1 and TRA-1 functions in gonadogenesis; EHN-2 isexpressed in SGP nuclei; ehn-3 expression is regulated by HND-1, whileEHN-3 regulates tra-1 expression; enh-3(q689) homozygotes have milddefects in gonadogenesis, but double homozygotes also carryinghnd-1(q740) or enh-3(q689) are strongly enhanced in the gonad defect;tra-1(e1099) is a dominant enhancer of ehn-3(q689); enh-3(q689)homozygotes have normal expression of HND-1, consistent with thehypothesis that hnd-1 and ehn-3 act in parallel. | Paper_evidence | WBPaper00006002 | |||||
| WBPaper00024274 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 04 Dec 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable metal ion binding activity. Involved in gonad development and positive regulation of gene expression. Located in nucleus. Expressed in Z1; Z4; and somatic gonad precursor. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK616.10a | |||||||
| ZK616.10b | |||||||||
| ZK616.10c | |||||||||
| Corresponding_CDS_history | ZK616.10:wp131 | ||||||||
| Corresponding_transcript | ZK616.10a.1 | ||||||||
| ZK616.10b.1 | |||||||||
| ZK616.10c.1 | |||||||||
| Associated_feature | WBsf651802 | ||||||||
| WBsf996502 | |||||||||
| WBsf996503 | |||||||||
| WBsf996504 | |||||||||
| Transcription_factor | WBTranscriptionFactor001123 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00038361 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00059547 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092053 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8877 | ||||||||
| Expr14793 | |||||||||
| Expr1014665 | |||||||||
| Expr1162964 | |||||||||
| Expr2011238 | |||||||||
| Expr2029474 | |||||||||
| Drives_construct | WBCnstr00001892 | ||||||||
| WBCnstr00001932 | |||||||||
| WBCnstr00018676 | |||||||||
| WBCnstr00018677 | |||||||||
| WBCnstr00040768 | |||||||||
| WBCnstr00041413 | |||||||||
| Construct_product | WBCnstr00001892 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (48) | |||||||||
| Interaction (53) | |||||||||
| Map_info | Map | IV | Position | 1.66274 | Error | 0.001322 | |||
| Positive | Positive_clone | ZK616 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4423 | |||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
