WormBase Tree Display for Gene: WBGene00016497
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WBGene00016497 | SMap | S_parent | Sequence | C37C3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||
Name | CGC_name | vps-32.2 | Person_evidence | WBPerson1763 | |||
Sequence_name | C37C3.3 | ||||||
Molecular_name | C37C3.3 | ||||||
Other_name (2) | |||||||
Public_name | vps-32.2 | ||||||
DB_info | Database | AceView | gene | 5I331 | |||
WormQTL | gene | WBGene00016497 | |||||
WormFlux | gene | WBGene00016497 | |||||
NDB | locus_tag | CELE_C37C3.3 | |||||
NCBI | gene | 183288 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (4) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0000336 | |||||
Gene_class | vps | ||||||
Allele (15) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00126899 | Caenorhabditis japonica | From_analysis | TreeFam | |||
WBGene00142327 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||
WBGene00054117 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
WBGene00101448 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||
Paralog | WBGene00011976 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00016961 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WBGene00018290 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00022027 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00022017 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||
WBGene00020025 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
Structured_description | Automated_description | Enriched in PLM; Y cell; intestine; and sensory neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-12; and let-7 based on tiling array; proteomic; microarray; and RNA-seq studies. Is affected by multi-walled carbon nanotube; Rifampin; and allantoin based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS_history | C37C3.3:wp154 | |||||
C37C3.3:wp261 | |||||||
Corresponding_pseudogene | C37C3.3 | ||||||
Other_sequence | FF680403.1 | ||||||
SSC00343_1 | |||||||
FK800257.1 | |||||||
Associated_feature | WBsf1000532 | ||||||
Experimental_info | Expr_pattern | Chronogram629 | |||||
Expr3595 | |||||||
Expr5457 | |||||||
Expr1011820 | |||||||
Expr1037074 | |||||||
Expr1146108 | |||||||
Expr2018022 | |||||||
Expr2036159 | |||||||
Drives_construct | WBCnstr00004061 | ||||||
WBCnstr00028017 | |||||||
Construct_product | WBCnstr00011519 | ||||||
WBCnstr00028017 | |||||||
Microarray_results | SMD_C37C3.3 | ||||||
SMD_C37C3.3:2 | |||||||
172257_x_at | |||||||
Aff_C37C3.3 | |||||||
GPL13394_WBGene00016497 | |||||||
GPL13914_C37C3.3 | |||||||
GPL14144_C37C3.3_368-427_0.945_2_A | |||||||
GPL8673_C37C3_3P00291 | |||||||
GPL8673_C37C3_3P00300 | |||||||
GPL8673_C37C3_3P00433 | |||||||
Expression_cluster (45) | |||||||
Interaction (42) | |||||||
Map_info | Map | V | Position | 0.917665 | Error | 0.000744 | |
Positive | Positive_clone | C37C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00026641 | ||||||
WBPaper00033139 | |||||||
WBPaper00038491 | |||||||
WBPaper00039823 | |||||||
WBPaper00040525 | |||||||
WBPaper00042550 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |