WormBase Tree Display for Gene: WBGene00013039
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| WBGene00013039 | SMap | S_parent | Sequence | Y49E10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scav-3 | |||||||
| Sequence_name | Y49E10.20 | ||||||||
| Molecular_name | Y49E10.20 | ||||||||
| Y49E10.20.1 | |||||||||
| CE22235 | |||||||||
| Other_name | CELE_Y49E10.20 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | scav-3 | ||||||||
| DB_info | Database | AceView | gene | 3N544 | |||||
| WormQTL | gene | WBGene00013039 | |||||||
| WormFlux | gene | WBGene00013039 | |||||||
| NDB | locus_tag | CELE_Y49E10.20 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013039|UniProtKB=Q9XTT3 | |||||||
| family | PTHR11923 | ||||||||
| NCBI | gene | 176673 | |||||||
| RefSeq | protein | NM_067224.8 | |||||||
| TrEMBL | UniProtAcc | Q9XTT3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XTT3 | |||||||
| OMIM | gene | 173510 | |||||||
| 602257 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Mar 2010 11:14:55 | WBPerson2970 | Name_change | CGC_name | scav-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scav | ||||||||
| Allele (78) | |||||||||
| Strain | WBStrain00001865 | ||||||||
| WBStrain00031927 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00101115 | ||||||||
| 00101116 | |||||||||
| 00101117 | |||||||||
| 00101118 | |||||||||
| 00120012 | |||||||||
| Ortholog (57) | |||||||||
| Paralog | WBGene00008542 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00008692 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011076 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015389 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013578 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | Y49E10.20 encodes a ortholog of human CD36 antigen (OMIM:173510, mutated in platelet glycoprotein IV deficiency); Y49E10.20 is needed for cell corpse engulfment in the germline and in the three-fold embryo, and for migration of the anterior arm of the gonad. | Paper_evidence | WBPaper00018249 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable scavenger receptor activity. Predicted to be involved in endocytosis. Predicted to be located in cytoplasm. Expressed in gonadal sheath cell; hypodermis; tail; and vulva. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; autoimmune disease (multiple); hematologic cancer (multiple); and myositis (multiple). Is an ortholog of human SCARB1 (scavenger receptor class B member 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (25) | ||||||||
| Molecular_info | Corresponding_CDS | Y49E10.20 | |||||||
| Corresponding_CDS_history | Y49E10.20:wp61 | ||||||||
| Y49E10.20:wp87 | |||||||||
| Corresponding_transcript | Y49E10.20.1 | ||||||||
| Other_sequence | CRC01409_1 | ||||||||
| CBC15168_1 | |||||||||
| CSC01959_1 | |||||||||
| CJC04482_1 | |||||||||
| CBC07086_1 | |||||||||
| CR07162 | |||||||||
| FD516703.1 | |||||||||
| CR00731 | |||||||||
| Tcir_isotig04690 | |||||||||
| Associated_feature | WBsf651544 | ||||||||
| WBsf667526 | |||||||||
| WBsf667527 | |||||||||
| WBsf667528 | |||||||||
| WBsf667529 | |||||||||
| WBsf667530 | |||||||||
| WBsf994649 | |||||||||
| WBsf227669 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020777 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037292 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006827 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057016 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062442 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078834 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076802 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1565 | ||||||||
| Expr7018 | |||||||||
| Expr13186 | |||||||||
| Expr16448 | |||||||||
| Expr1015692 | |||||||||
| Expr1035796 | |||||||||
| Expr1160459 | |||||||||
| Expr2015616 | |||||||||
| Expr2033851 | |||||||||
| Drives_construct | WBCnstr00002658 | ||||||||
| WBCnstr00043033 | |||||||||
| Construct_product | WBCnstr00043033 | ||||||||
| Antibody | WBAntibody00003050 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction (50) | |||||||||
| Map_info | Map | III | Position | 17.9048 | Error | 0.012444 | |||
| Positive | Positive_clone | Y49E10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
