WormBase Tree Display for Gene: WBGene00012505
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WBGene00012505 | SMap | S_parent | Sequence | Y26D4A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | pals-13 | Person_evidence | WBPerson260 | |||||
Sequence_name | Y26D4A.8 | ||||||||
Molecular_name (4) | |||||||||
Other_name | CELE_Y26D4A.8 | Accession_evidence | NDB | BX284601 | |||||
Public_name | pals-13 | ||||||||
DB_info | Database | AceView | gene | 1N672 | |||||
WormQTL | gene | WBGene00012505 | |||||||
WormFlux | gene | WBGene00012505 | |||||||
NDB | locus_tag | CELE_Y26D4A.8 | |||||||
NCBI | gene | 189548 | |||||||
RefSeq | mRNA | NM_060889.1 | |||||||
protein | NP_493290.1 | ||||||||
NM_060889.2 | |||||||||
TREEFAM | TREEFAM_ID | TF322118 | |||||||
UniProt | UniProtAcc | Q9U2P6 | |||||||
TrEMBL | UniProtAcc | Q9U2P6 | |||||||
UniProt_GCRP | UniProtAcc | Q9U2P6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 26 Oct 2016 09:42:35 | WBPerson2970 | Name_change | CGC_name | pals-13 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pals | ||||||||
Allele (98) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00271585 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | |||||
CSP26.g4056 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP40.g862 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cnig_chr_V.g18706 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
GCK72_018441 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
chrI_pilon.g2647 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog | WBGene00007657 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WormBase-Compara | |||||||||
WBGene00007659 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00007660 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00007131 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00007132 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00007134 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Enriched in intestine based on RNA-seq studies. Is affected by several genes including sir-2.1; clk-1; and csr-1 based on microarray and RNA-seq studies. Is affected by six chemicals including allantoin; metformin; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (3) | |||||||||
Experimental_info | RNAi_result | WBRNAi00002980 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00055750 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00004571 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1025809 | ||||||||
Expr1159273 | |||||||||
Expr2032922 | |||||||||
Drives_construct | WBCnstr00029937 | ||||||||
Construct_product | WBCnstr00029937 | ||||||||
Microarray_results (14) | |||||||||
Expression_cluster (43) | |||||||||
Map_info | Map | I | Position | 17.2163 | |||||
Positive | Positive_clone | Y26D4A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |