WormBase Tree Display for Gene: WBGene00011304
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| WBGene00011304 | SMap | S_parent | Sequence | R166 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mnk-1 | Person_evidence | WBPerson649 | |||||
| Sequence_name | R166.5 | ||||||||
| Molecular_name | R166.5a | ||||||||
| R166.5a.1 | |||||||||
| CE40867 | |||||||||
| R166.5b | |||||||||
| CE40868 | |||||||||
| R166.5b.1 | |||||||||
| R166.5b.2 | |||||||||
| R166.5b.3 | |||||||||
| Other_name | CELE_R166.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | mnk-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Nov 2005 11:04:11 | WBPerson2970 | Name_change | CGC_name | mnk-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mnk | ||||||||
| Allele (189) | |||||||||
| Strain | WBStrain00032772 | ||||||||
| WBStrain00032792 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (28) | |||||||||
| Contained_in_operon | CEOP2492 | ||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00007007 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00010681 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010700 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | mnk-1 encodes the C. elegans ortholog of the Mnk MAP kinase-interacting kinase | Paper_evidence | WBPaper00029088 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 06 Jan 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium-dependent protein serine/threonine kinase activity; calmodulin binding activity; and calmodulin-dependent protein kinase activity. Involved in behavioral response to nicotine; determination of adult lifespan; and regulation of protein deneddylation. Located in nucleus. Expressed in body wall musculature; intestine; pharyngeal muscle cell; pharynx; and vulval muscle. Is an ortholog of human MKNK2 (MAPK interacting serine/threonine kinase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R166.5a | |||||||
| R166.5b | |||||||||
| Corresponding_CDS_history | R166.5a:wp174 | ||||||||
| R166.5b:wp174 | |||||||||
| Corresponding_transcript | R166.5a.1 | ||||||||
| R166.5b.1 | |||||||||
| R166.5b.2 | |||||||||
| R166.5b.3 | |||||||||
| Other_sequence (28) | |||||||||
| Associated_feature (44) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00022430 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00087960 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052001 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098176 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034950 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8726 | ||||||||
| Expr12279 | |||||||||
| Expr12280 | |||||||||
| Expr1010706 | |||||||||
| Expr1034970 | |||||||||
| Expr1155643 | |||||||||
| Expr2013630 | |||||||||
| Expr2031864 | |||||||||
| Drives_construct | WBCnstr00020569 | ||||||||
| WBCnstr00020570 | |||||||||
| WBCnstr00030760 | |||||||||
| Construct_product | WBCnstr00007588 | ||||||||
| WBCnstr00013484 | |||||||||
| WBCnstr00030760 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | II | Position | 3.07927 | Error | 0.002192 | |||
| Positive | Positive_clone | R166 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027258 | ||||||||
| WBPaper00029088 | |||||||||
| WBPaper00033469 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046636 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064006 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
