WormBase Tree Display for Gene: WBGene00011257
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| WBGene00011257 | SMap | S_parent | Sequence | R13 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | npax-3 | Paper_evidence | WBPaper00003599 | |||||
| Person_evidence | WBPerson260 | ||||||||
| Sequence_name | R13.2 | ||||||||
| Molecular_name | R13.2 | ||||||||
| R13.2.1 | |||||||||
| CE40774 | |||||||||
| Other_name | CELE_R13.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | npax-3 | ||||||||
| DB_info | Database | AceView | gene | 4L590 | |||||
| WormQTL | gene | WBGene00011257 | |||||||
| WormFlux | gene | WBGene00011257 | |||||||
| NDB | locus_tag | CELE_R13.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011257|UniProtKB=Q21972 | |||||||
| family | PTHR45636 | ||||||||
| NCBI | gene | 187848 | |||||||
| RefSeq | protein | NM_069605.3 | |||||||
| TREEFAM | TREEFAM_ID | TF319497 | |||||||
| TrEMBL | UniProtAcc | Q21972 | |||||||
| UniProt_GCRP | UniProtAcc | Q21972 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 May 2010 15:24:57 | WBPerson2970 | Name_change | CGC_name | npax-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npax | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00073542 | ||||||||
| 00073543 | |||||||||
| 00073544 | |||||||||
| 00073545 | |||||||||
| 00073546 | |||||||||
| 00073547 | |||||||||
| 00073548 | |||||||||
| 00118512 | |||||||||
| 00118513 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00003937 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00003939 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00006870 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00007496 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00013147 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018591 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00017664 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| Structured_description | Concise_description | npax-3 is a Paired domain-only protein; it is divergent and encodes only the first part of the Paired domain (the PAI subdomain); the PAI subdomain is predicted to be DNA binding; it seems to lack an EH1 (octapeptide); npax-3 is involved in nematode larval development and reproduction; npax-3 is expressed in the intestine, dorsal nerve cord, head neurons, and the tail neurons. | Paper_evidence | WBPaper00046864 | |||||
| WBPaper00029055 | |||||||||
| WBPaper00003599 | |||||||||
| WBPaper00051112 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Expressed in dorsal nerve cord; head neurons; intestine; and tail neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R13.2 | |||||||
| Corresponding_CDS_history | R13.2:wp172 | ||||||||
| Corresponding_transcript | R13.2.1 | ||||||||
| Associated_feature | WBsf978858 | ||||||||
| WBsf997712 | |||||||||
| WBsf997713 | |||||||||
| WBsf1018149 | |||||||||
| Transcription_factor | WBTranscriptionFactor000842 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00017804 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034904 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051869 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7641 | ||||||||
| Expr1017431 | |||||||||
| Expr1155527 | |||||||||
| Expr2014363 | |||||||||
| Expr2032604 | |||||||||
| Drives_construct | WBCnstr00012786 | ||||||||
| WBCnstr00030801 | |||||||||
| Construct_product | WBCnstr00030801 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (45) | |||||||||
| Interaction (82) | |||||||||
| Map_info | Map | IV | Position | 4.71636 | Error | 0.002914 | |||
| Positive | Positive_clone | R13 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003599 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
