WormBase Tree Display for Gene: WBGene00011122
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| WBGene00011122 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cpt-2 | Person_evidence | WBPerson3206 | |||||
| WBPerson3205 | |||||||||
| Sequence_name | R07H5.2 | ||||||||
| Molecular_name | R07H5.2a | ||||||||
| R07H5.2a.1 | |||||||||
| CE47933 | |||||||||
| R07H5.2b | |||||||||
| CE47988 | |||||||||
| R07H5.2c | |||||||||
| CE49980 | |||||||||
| R07H5.2b.1 | |||||||||
| R07H5.2c.1 | |||||||||
| Other_name | CELE_R07H5.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cpt-2 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00011122 | |||||
| WormFlux | gene | WBGene00011122 | |||||||
| NDB | locus_tag | CELE_R07H5.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011122|UniProtKB=G5ECS9 | |||||||
| family | PTHR22589 | ||||||||
| NCBI | gene | 178025 | |||||||
| RefSeq | protein | NM_001047513.5 | |||||||
| NM_001307075.3 | |||||||||
| NM_001047512.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF315202 | |||||||
| TrEMBL | UniProtAcc | G5ECS9 | |||||||
| G5EFE6 | |||||||||
| A0A061AL65 | |||||||||
| UniProt_GCRP | UniProtAcc | G5ECS9 | |||||||
| OMIM | gene | 600650 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | cpt-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpt | ||||||||
| Allele (43) | |||||||||
| Strain | WBStrain00001699 | ||||||||
| WBStrain00052086 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000419 | ||||||||
| 00000420 | |||||||||
| 00000421 | |||||||||
| 00000422 | |||||||||
| 00118418 | |||||||||
| Contained_in_operon | CEOP4424 | ||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00000481 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007175 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00008629 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009622 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021002 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020911 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021703 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019644 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012907 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011850 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cpt-2 encodes a carnitine palmitoyltranferase orthologous to the human gene CPT2, an enzyme involved in fatty acid oxidation. | Curator_confirmed | WBPerson324 | |||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable carnitine O-palmitoyltransferase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in brain disease; lipid metabolism disorder; and muscular disease. Is an ortholog of human CPT2 (carnitine palmitoyltransferase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080000 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2330) | ||||
| DOID:936 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2330) | ||||||
| DOID:3146 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2330) | ||||||
| Molecular_info | Corresponding_CDS | R07H5.2a | |||||||
| R07H5.2b | |||||||||
| R07H5.2c | |||||||||
| Corresponding_transcript | R07H5.2a.1 | ||||||||
| R07H5.2b.1 | |||||||||
| R07H5.2c.1 | |||||||||
| Other_sequence (88) | |||||||||
| Associated_feature | WBsf646361 | ||||||||
| WBsf660691 | |||||||||
| WBsf660692 | |||||||||
| WBsf997790 | |||||||||
| WBsf229114 | |||||||||
| WBsf229115 | |||||||||
| WBsf229116 | |||||||||
| Experimental_info | RNAi_result (35) | ||||||||
| Expr_pattern | Chronogram1547 | ||||||||
| Expr6481 | |||||||||
| Expr1022291 | |||||||||
| Expr1034891 | |||||||||
| Expr1155188 | |||||||||
| Expr2010515 | |||||||||
| Expr2028755 | |||||||||
| Drives_construct | WBCnstr00002523 | ||||||||
| WBCnstr00030913 | |||||||||
| Construct_product | WBCnstr00030913 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (68) | |||||||||
| Map_info | Map | IV | Position | 4.92108 | Error | 0.000512 | |||
| Positive | Positive_clone | R07H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
