WormBase Tree Display for Gene: WBGene00011076
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WBGene00011076 | SMap | S_parent | Sequence | R07B1 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | scav-5 | |||||
Sequence_name | R07B1.3 | ||||||
Molecular_name | R07B1.3 | ||||||
R07B1.3.1 | |||||||
CE47857 | |||||||
Other_name | CELE_R07B1.3 | Accession_evidence | NDB | BX284606 | |||
Public_name | scav-5 | ||||||
DB_info | Database | AceView | gene | XK479 | |||
WormQTL | gene | WBGene00011076 | |||||
WormFlux | gene | WBGene00011076 | |||||
NDB | locus_tag | CELE_R07B1.3 | |||||
Panther | gene | CAEEL|WormBase=WBGene00011076|UniProtKB=Q09606 | |||||
family | PTHR11923 | ||||||
NCBI | gene | 181200 | |||||
RefSeq | protein | NM_077250.7 | |||||
SwissProt | UniProtAcc | Q09606 | |||||
UniProt_GCRP | UniProtAcc | Q09606 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | scav | ||||||
Allele (49) | |||||||
Strain | WBStrain00032107 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00055069 | ||||||
00055070 | |||||||
00055071 | |||||||
00055072 | |||||||
00055073 | |||||||
00118366 | |||||||
Ortholog (41) | |||||||
Paralog | WBGene00008542 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | |||||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00008692 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00015389 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00013039 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00013578 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Predicted to enable scavenger receptor activity. Predicted to be involved in endocytosis. Predicted to be located in cytoplasm. Is an ortholog of human SCARB1 (scavenger receptor class B member 1). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | R07B1.3 | |||||
Corresponding_transcript | R07B1.3.1 | ||||||
Other_sequence | CJC00424_1 | ||||||
Associated_feature | WBsf648430 | ||||||
WBsf663206 | |||||||
WBsf1006555 | |||||||
WBsf236205 | |||||||
WBsf236206 | |||||||
Experimental_info | RNAi_result (4) | ||||||
Expr_pattern | Expr1013043 | ||||||
Expr1155102 | |||||||
Expr2015618 | |||||||
Expr2033853 | |||||||
Drives_construct | WBCnstr00030950 | ||||||
Construct_product | WBCnstr00030950 | ||||||
Microarray_results (21) | |||||||
Expression_cluster (176) | |||||||
Interaction (22) | |||||||
Map_info | Map | X | Position | 1.72968 | Error | 0.000308 | |
Positive | Positive_clone | R07B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00010266 | ||||||
WBPaper00018248 | |||||||
WBPaper00018249 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00061821 | |||||||
WBPaper00065146 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |