WormBase Tree Display for Gene: WBGene00010700
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WBGene00010700 | SMap | S_parent | Sequence | K09A9 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name (5) | |||||||
DB_info | Database (11) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nipi | ||||||
Allele (47) | |||||||
Strain | WBStrain00003315 | ||||||
WBStrain00021982 | |||||||
WBStrain00021978 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (20) | |||||||
Ortholog (28) | |||||||
Paralog | WBGene00007007 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00010681 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00011304 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | nipi-3 encodes a kinase similar to the human kinase Tribbles homolog 1; nipi-3 functions in the innate immune response, likely upstream of the SEK-1 MAPKK, to upregulate expression of NLP-29, an antimicrobial peptide, in response to fungal infection. | Paper_evidence | WBPaper00031666 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 04 Feb 2011 00:00:00 | ||||||
Automated_description | Enables DNA-binding transcription factor binding activity. Involved in defense response to other organism and regulation of gene expression. Predicted to be located in nucleus. Expressed in CAN; hypodermis; motor neurons; pharynx; and touch receptor neurons. Is an ortholog of human TRIB1 (tribbles pseudokinase 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | K09A9.1 | |||||
Corresponding_CDS_history | K09A9.1:wp98 | ||||||
K09A9.1:wp190 | |||||||
Corresponding_transcript | K09A9.1.1 | ||||||
Other_sequence | CR04824 | ||||||
CRC00651_1 | |||||||
CBC12317_1 | |||||||
CJC06811_1 | |||||||
CR06179 | |||||||
Associated_feature (8) | |||||||
Experimental_info | RNAi_result (27) | ||||||
Expr_pattern | Chronogram892 | ||||||
Expr6374 | |||||||
Expr8070 | |||||||
Expr12563 | |||||||
Expr13665 | |||||||
Expr1027431 | |||||||
Expr1034682 | |||||||
Expr1154069 | |||||||
Expr2014263 | |||||||
Expr2032503 | |||||||
Drives_construct | WBCnstr00000508 | ||||||
WBCnstr00003786 | |||||||
WBCnstr00006335 | |||||||
WBCnstr00007217 | |||||||
WBCnstr00013088 | |||||||
WBCnstr00031209 | |||||||
Construct_product | WBCnstr00000508 | ||||||
WBCnstr00006335 | |||||||
WBCnstr00007219 | |||||||
WBCnstr00007220 | |||||||
WBCnstr00007221 | |||||||
WBCnstr00007222 | |||||||
WBCnstr00031209 | |||||||
Regulate_expr_cluster | WBPaper00050515:nipi-3(fr4)_downregulated | ||||||
WBPaper00050515:nipi-3(fr4)_upregulated | |||||||
Microarray_results (24) | |||||||
Expression_cluster (205) | |||||||
Interaction (13) | |||||||
WBProcess | WBbiopr:00000001 | ||||||
WBbiopr:00000039 | |||||||
Map_info | Map | X | Position | 22.9309 | Error | 0.001583 | |
Positive | Positive_clone | K09A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (18) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |