WormBase Tree Display for Gene: WBGene00008993
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WBGene00008993 | SMap | S_parent | Sequence | F21A3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | F21A3.3 | |||||||
Molecular_name | F21A3.3 | ||||||||
F21A3.3.1 | |||||||||
CE40043 | |||||||||
Other_name | CELE_F21A3.3 | Accession_evidence | NDB | BX284605 | |||||
Public_name | F21A3.3 | ||||||||
DB_info | Database | AceView | gene | 5P995 | |||||
WormQTL | gene | WBGene00008993 | |||||||
WormFlux | gene | WBGene00008993 | |||||||
NDB | locus_tag | CELE_F21A3.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00008993|UniProtKB=O17829 | |||||||
family | PTHR15854 | ||||||||
NCBI | gene | 184748 | |||||||
RefSeq | protein | NM_074461.5 | |||||||
TREEFAM | TREEFAM_ID | TF315956 | |||||||
TrEMBL | UniProtAcc | O17829 | |||||||
UniProt_GCRP | UniProtAcc | O17829 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (38) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (25) | |||||||||
Paralog | WBGene00003104 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00008260 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00016196 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00015794 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00012143 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00012917 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00044557 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | F21A3.3 encodes a putatively secreted protein, with an N-terminalEGF-liked domain and a DUF1794 domain, that is homologous to humanTHAP4/CGI-36; F21A3.3 is a paralog of MAB-7, C15F1.1, C28H8.5, C52G5.2,T28H10.2, and a domain in Y46G5A.29. | Paper_evidence | WBPaper00004133 | |||||
WBPaper00028842 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 11 Dec 2006 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABplppppaa; AFD; interfacial epithelial cell; rectal gland cell; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on tiling array; RNA-seq; and microarray studies. Is affected by thirteen chemicals including rotenone; D-glucose; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: ShK domain-like; Calycin; ShKT domain; THAP4-like, heme-binding beta-barrel domain; and Nitrobindin family. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F21A3.3 | |||||||
Corresponding_CDS_history | F21A3.3:wp156 | ||||||||
Corresponding_transcript | F21A3.3.1 | ||||||||
Other_sequence (13) | |||||||||
Associated_feature | WBsf647598 | ||||||||
WBsf647599 | |||||||||
WBsf647600 | |||||||||
WBsf233035 | |||||||||
Experimental_info | RNAi_result | WBRNAi00045162 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00031198 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1025703 | ||||||||
Expr1033915 | |||||||||
Expr1149100 | |||||||||
Expr2002804 | |||||||||
Expr2021021 | |||||||||
Drives_construct | WBCnstr00032539 | ||||||||
Construct_product | WBCnstr00032539 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (170) | |||||||||
Interaction | WBInteraction000282971 | ||||||||
WBInteraction000306535 | |||||||||
WBInteraction000327177 | |||||||||
WBInteraction000392600 | |||||||||
Map_info | Positive | Positive_clone | F21A3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | V | 8.32924 | |||||||
Method | Gene |