WormBase Tree Display for Gene: WBGene00007776
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| WBGene00007776 | SMap | S_parent | Sequence | C27C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | dmd-4 | Person_evidence | WBPerson1375 | |||||
| WBPerson1997 | |||||||||
| Sequence_name | C27C12.6 | ||||||||
| Molecular_name | C27C12.6 | ||||||||
| C27C12.6.1 | |||||||||
| CE23560 | |||||||||
| Other_name | tag-248 | ||||||||
| CELE_C27C12.6 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | dmd-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | dmd-4 | ||||
| 3 | 29 Jun 2006 15:38:48 | WBPerson2970 | Event | Acquires_merge | WBGene00044327 | ||||
| Name_change | Other_name | tag-248 | |||||||
| Acquires_merge | WBGene00044327 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dmd | ||||||||
| Allele (65) | |||||||||
| Strain | WBStrain00036099 | ||||||||
| WBStrain00030017 | |||||||||
| WBStrain00047413 | |||||||||
| WBStrain00047411 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00003100 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00017326 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00007929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00003114 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007058 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012832 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019521 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020708 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022060 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enables ubiquitin binding activity. Involved in synapse pruning. Predicted to be located in nucleus. Expressed in neurons. Is an ortholog of human DMRT3 (doublesex and mab-3 related transcription factor 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C27C12.6 | |||||||
| Corresponding_transcript | C27C12.6.1 | ||||||||
| Other_sequence | PPC19769_1 | ||||||||
| Dviv_isotig33225 | |||||||||
| JI181126.1 | |||||||||
| Oden_isotig13313 | |||||||||
| Oden_isotig22718 | |||||||||
| Associated_feature | WBsf654611 | ||||||||
| WBsf978903 | |||||||||
| WBsf238265 | |||||||||
| Gene_product_binds (154) | |||||||||
| Transcription_factor | WBTranscriptionFactor000651 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00029265 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041328 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011252 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5352 | ||||||||
| Expr7449 | |||||||||
| Expr10268 | |||||||||
| Expr10269 | |||||||||
| Expr10270 | |||||||||
| Expr1016260 | |||||||||
| Expr1145372 | |||||||||
| Expr1200014 | |||||||||
| Expr2010955 | |||||||||
| Expr2029194 | |||||||||
| Drives_construct | WBCnstr00004007 | ||||||||
| WBCnstr00012593 | |||||||||
| WBCnstr00015217 | |||||||||
| WBCnstr00015218 | |||||||||
| WBCnstr00016512 | |||||||||
| WBCnstr00033490 | |||||||||
| Construct_product | WBCnstr00016808 | ||||||||
| WBCnstr00033490 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (106) | |||||||||
| Interaction (81) | |||||||||
| Map_info | Map | X | Position | 21.4647 | Error | 0.006141 | |||
| Positive | Positive_clone | C27C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5384 | |||||||
| 4318 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047905 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058502 | |||||||||
| WBPaper00060427 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00064718 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
