WormBase Tree Display for Gene: WBGene00006470
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| WBGene00006470 | SMap | S_parent | Sequence | F40F9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tag-120 | Person_evidence | WBPerson201 | |||||
| Sequence_name | F40F9.2 | ||||||||
| Molecular_name | F40F9.2 | ||||||||
| F40F9.2.1 | |||||||||
| CE05851 | |||||||||
| Other_name | CELE_F40F9.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | tag-120 | ||||||||
| DB_info | Database | AceView | gene | 5K188 | |||||
| WormQTL | gene | WBGene00006470 | |||||||
| WormFlux | gene | WBGene00006470 | |||||||
| NDB | locus_tag | CELE_F40F9.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006470|UniProtKB=Q20241 | |||||||
| family | PTHR23291 | ||||||||
| NCBI | gene | 179362 | |||||||
| RefSeq | protein | NM_073100.9 | |||||||
| TREEFAM | TREEFAM_ID | TF319996 | |||||||
| TrEMBL | UniProtAcc | Q20241 | |||||||
| UniProt_GCRP | UniProtAcc | Q20241 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tag | ||||||||
| Allele (32) | |||||||||
| Strain | WBStrain00032896 | ||||||||
| WBStrain00035757 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00067609 | ||||||||
| 00067610 | |||||||||
| 00067611 | |||||||||
| 00067612 | |||||||||
| 00067613 | |||||||||
| 00067614 | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00021537 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019664 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006479 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009580 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | tag-120 encodes a predicted transmembrane protein; as loss of tag-120 activity via RNAi does not result in any abnormalities, the precise role of TAG-120 in C. elegans development and/or behavior is not yet known; however, TAG-120 is homologous to a Drosophila NMDA receptor-associated protein and mammalian transmembrane proteins that function in Fas-mediated cell death, so TAG-120 may play a role in neuronal functions and/or apoptosis; a tag-120 reporter fusion is expressed in the nervous system, pharyngeal muscles, and to a lesser extent in the excretory system. | Paper_evidence | WBPaper00025129 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 10 Nov 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in negative regulation of apoptotic signaling pathway. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and membrane. Expressed in excretory system; neurons; and pharyngeal muscle cell. Is an ortholog of human GRINA (glutamate ionotropic receptor NMDA type subunit associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F9.2 | |||||||
| Corresponding_transcript | F40F9.2.1 | ||||||||
| Other_sequence (38) | |||||||||
| Associated_feature | WBsf652937 | ||||||||
| WBsf669248 | |||||||||
| WBsf234262 | |||||||||
| WBsf234263 | |||||||||
| WBsf234264 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062737 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046883 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032041 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014670 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062738 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3291 | ||||||||
| Expr1017399 | |||||||||
| Expr1032640 | |||||||||
| Expr1150750 | |||||||||
| Expr2017224 | |||||||||
| Expr2035360 | |||||||||
| Drives_construct | WBCnstr00011288 | ||||||||
| WBCnstr00034345 | |||||||||
| Construct_product | WBCnstr00034345 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (208) | |||||||||
| Interaction (59) | |||||||||
| Map_info | Map | V | Position | 2.09996 | Error | 0.004803 | |||
| Positive | Positive_clone | F40F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062388 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
