WormBase Tree Display for Gene: WBGene00009580
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| WBGene00009580 | SMap | S_parent | Sequence | F40F9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | xbx-6 | Person_evidence | WBPerson641 | |||||
| WBPerson3089 | |||||||||
| Sequence_name | F40F9.1 | ||||||||
| Molecular_name | F40F9.1a | ||||||||
| F40F9.1a.1 | |||||||||
| CE31343 | |||||||||
| F40F9.1b | |||||||||
| CE31344 | |||||||||
| F40F9.1a.2 | |||||||||
| F40F9.1b.1 | |||||||||
| F40F9.1b.2 | |||||||||
| F40F9.1b.3 | |||||||||
| F40F9.1c | |||||||||
| Other_name | CELE_F40F9.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | xbx-6 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | xbx-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | xbx | ||||||||
| Allele (75) | |||||||||
| Strain | WBStrain00001364 | ||||||||
| WBStrain00029250 | |||||||||
| WBStrain00031668 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00084480 | ||||||||
| 00084481 | |||||||||
| 00084482 | |||||||||
| 00084483 | |||||||||
| 00084484 | |||||||||
| 00084485 | |||||||||
| Ortholog (48) | |||||||||
| Paralog | WBGene00006470 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006479 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019664 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021537 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in negative regulation of apoptotic signaling pathway. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and membrane. Expressed in neurons; pharyngeal muscle cell; tail; and ventral nerve cord. Is an ortholog of human GRINA (glutamate ionotropic receptor NMDA type subunit associated protein 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F9.1a | |||||||
| F40F9.1b | |||||||||
| Corresponding_CDS_history | F40F9.1:wp82 | ||||||||
| Corresponding_transcript | F40F9.1c | ||||||||
| F40F9.1a.1 | |||||||||
| F40F9.1a.2 | |||||||||
| F40F9.1b.1 | |||||||||
| F40F9.1b.2 | |||||||||
| F40F9.1b.3 | |||||||||
| Other_sequence (53) | |||||||||
| Associated_feature | WBsf232286 | ||||||||
| WBsf232287 | |||||||||
| WBsf232288 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr3290 | ||||||||
| Expr3484 | |||||||||
| Expr6014 | |||||||||
| Expr10142 | |||||||||
| Expr1023948 | |||||||||
| Expr1034192 | |||||||||
| Expr1150748 | |||||||||
| Expr2018094 | |||||||||
| Expr2036232 | |||||||||
| Drives_construct | WBCnstr00002254 | ||||||||
| WBCnstr00011287 | |||||||||
| WBCnstr00011417 | |||||||||
| Microarray_results (35) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | V | Position | 2.08834 | Error | 0.005872 | |||
| Positive | Positive_clone | F40F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5142 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025051 | ||||||||
| WBPaper00032078 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059097 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
