WormBase Tree Display for Gene: WBGene00004412
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| WBGene00004412 | SMap | S_parent | Sequence | Y71F9AL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rpl-1 | |||||||
| Sequence_name | Y71F9AL.13 | ||||||||
| Molecular_name | Y71F9AL.13a | ||||||||
| Y71F9AL.13a.1 | |||||||||
| CE25552 | |||||||||
| Y71F9AL.13b | |||||||||
| CE28379 | |||||||||
| Y71F9AL.13b.1 | |||||||||
| Y71F9AL.13c | |||||||||
| Y71F9AL.13d | |||||||||
| Other_name | rpl-10a | Accession_evidence | EMBL | AJ270980 | |||||
| CELE_Y71F9AL.13 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | rpl-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 05 Jul 2004 10:33:04 | WBPerson1971 | Name_change | Other_name | rpl-10a | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpl | ||||||||
| Allele (15) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl1 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089610 | ||||||||
| 00089611 | |||||||||
| 00094658 | |||||||||
| 00094659 | |||||||||
| 00094660 | |||||||||
| 00112797 | |||||||||
| 00112798 | |||||||||
| 00112799 | |||||||||
| 00112800 | |||||||||
| Contained_in_operon | CEOP1064 | ||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00010896 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00012964 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004419 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009993 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00017997 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | rpl-1 encodes a large ribosomal subunit L10a protein; by homology, RPL-1 is predicted to function in protein biosynthesis; in C. elegans, RPL-1 activity is essential for embryonic development. | Paper_evidence | WBPaper00004402 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL10A (ribosomal protein L10a). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71F9AL.13a | |||||||
| Y71F9AL.13b | |||||||||
| Corresponding_transcript | Y71F9AL.13c | ||||||||
| Y71F9AL.13d | |||||||||
| Y71F9AL.13a.1 | |||||||||
| Y71F9AL.13b.1 | |||||||||
| Other_sequence (410) | |||||||||
| Associated_feature | WBsf648993 | ||||||||
| WBsf648994 | |||||||||
| WBsf648995 | |||||||||
| WBsf663986 | |||||||||
| WBsf663987 | |||||||||
| WBsf980977 | |||||||||
| WBsf219071 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr1018176 | ||||||||
| Expr1032217 | |||||||||
| Expr1161572 | |||||||||
| Expr2015448 | |||||||||
| Expr2033683 | |||||||||
| Construct_product | WBCnstr00022671 | ||||||||
| WBCnstr00041963 | |||||||||
| Microarray_results (37) | |||||||||
| Expression_cluster (166) | |||||||||
| Interaction (246) | |||||||||
| Map_info | Map | I | Position | -5.30862 | Error | 0.000722 | |||
| Positive | Positive_clone | Y71F9AL | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
