WormBase Tree Display for Gene: WBGene00004419
expand all nodes | collapse all nodes | view schema
| WBGene00004419 | SMap | S_parent | Sequence | Y24D9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rpl-7A | |||||||
| Sequence_name | Y24D9A.4 | ||||||||
| Molecular_name | Y24D9A.4 | ||||||||
| Y24D9A.4.1 | |||||||||
| CE27398 | |||||||||
| Other_name | rpl-8 | CGC_data_submission | |||||||
| phi-22 | Person_evidence | WBPerson2582 | |||||||
| Surf-3 | Paper_evidence | WBPaper00013574 | |||||||
| CELE_Y24D9A.4 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | rpl-7A | ||||||||
| DB_info | Database | AceView | gene | 4F154 | |||||
| WormQTL | gene | WBGene00004419 | |||||||
| WormFlux | gene | WBGene00004419 | |||||||
| NDB | locus_tag | CELE_Y24D9A.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004419|UniProtKB=Q966C6 | |||||||
| family | PTHR23105 | ||||||||
| NCBI | gene | 177203 | |||||||
| RefSeq | protein | NM_171316.9 | |||||||
| SwissProt | UniProtAcc | Q966C6 | |||||||
| UniProt_GCRP | UniProtAcc | Q966C6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 06 Jul 2004 10:07:57 | WBPerson1971 | Name_change | CGC_name | rpl-7A | ||||
| 3 | 17 Mar 2005 13:55:29 | WBPerson2970 | Name_change | Other_name | phi-22 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpl | ||||||||
| Allele (32) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl8 using blastP | ||||||||
| Strain | WBStrain00003400 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00090857 | ||||||||
| 00090858 | |||||||||
| 00090859 | |||||||||
| 00090860 | |||||||||
| 00090861 | |||||||||
| 00090862 | |||||||||
| 00090863 | |||||||||
| Ortholog (53) | |||||||||
| Paralog | WBGene00004412 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00010896 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00012964 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009993 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00017997 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | rpl-7A encodes a large ribosomal subunit L7a protein required in mass RNAi assays for fertility, vulval development, and general health; the rpl-7A transcription unit has one nonsense transcript that is up-regulated in vivo by smg[-] mutations, indicating that rpl-7A is a natural substrate for SMG-mediated nonsense suppresssion; several other natural mRNA substrates of SMG suppression (e.g., rpl-3, rpl-10, rpl-12) have protein products that are involved in translation; RPL-7A binds bovine calmodulin in vitro in a calcium-dependent manner. | Paper_evidence | WBPaper00004313 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| WBPaper00031011 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 04 May 2010 00:00:00 | ||||||||
| Automated_description | Enables calmodulin binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL7A (ribosomal protein L7a). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y24D9A.4 | |||||||
| Corresponding_CDS_history | Y24D9A.4b:wp121 | ||||||||
| Y24D9A.4c:wp270 | |||||||||
| Corresponding_transcript | Y24D9A.4.1 | ||||||||
| Corresponding_transcript_history | Y24D9A.4d:wp195 | ||||||||
| Other_sequence (195) | |||||||||
| Associated_feature | WBsf651726 | ||||||||
| WBsf667668 | |||||||||
| WBsf667875 | |||||||||
| WBsf981739 | |||||||||
| WBsf229958 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Chronogram355 | ||||||||
| Expr6909 | |||||||||
| Expr1020085 | |||||||||
| Expr1032223 | |||||||||
| Expr1159240 | |||||||||
| Expr2015481 | |||||||||
| Expr2033716 | |||||||||
| Drives_construct | WBCnstr00003868 | ||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (184) | |||||||||
| Interaction (312) | |||||||||
| Map_info | Map | IV | Position | 0.197591 | Error | 0.00512 | |||
| Positive | Positive_clone | Y24D9A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00013574 | ||||||||
| WBPaper00028807 | |||||||||
| WBPaper00031011 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060662 | |||||||||
| WBPaper00062737 | |||||||||
| WBPaper00064158 | |||||||||
| WBPaper00065861 | |||||||||
| Remark | This gene previously was known as rpl-8 with rpl-7A as an other name. Following advice from the CGC, this situation has been reversed and rpl-7A is now the main (CGC approved) name for this gene [040706 krb] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
