WormBase Tree Display for Gene: WBGene00002987
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WBGene00002987 | SMap | S_parent | Sequence | ZC64 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | lim-4 | Person_evidence | WBPerson545 | |||
Sequence_name | ZC64.4 | ||||||
Molecular_name | ZC64.4a | ||||||
ZC64.4a.1 | |||||||
CE25675 | |||||||
ZC64.4b | |||||||
CE51976 | |||||||
ZC64.4c | |||||||
CE52031 | |||||||
ZC64.4b.1 | |||||||
ZC64.4c.1 | |||||||
Other_name | nss-1 | Paper_evidence | WBPaper00026818 | ||||
CELE_ZC64.4 | Accession_evidence | NDB | BX284606 | ||||
Public_name | lim-4 | ||||||
DB_info | Database | AceView | gene | XE490 | |||
WormQTL | gene | WBGene00002987 | |||||
WormFlux | gene | WBGene00002987 | |||||
NDB | locus_tag | CELE_ZC64.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00002987|UniProtKB=G5EEA1 | |||||
family | PTHR24208 | ||||||
NCBI | gene | 180672 | |||||
RefSeq | protein | NM_076268.2 | |||||
NM_001351878.2 | |||||||
NM_001351879.2 | |||||||
SwissProt | UniProtAcc | G5EEA1 | |||||
UniProt_GCRP | UniProtAcc | G5EEA1 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Acquires_merge | WBGene00003820 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lim | ||||||
Allele (81) | |||||||
Strain | WBStrain00001913 | ||||||
WBStrain00023455 | |||||||
WBStrain00029156 | |||||||
WBStrain00005258 | |||||||
WBStrain00049271 | |||||||
In_cluster | conserved_RDE-1_cluster | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (24) | |||||||
Ortholog (38) | |||||||
Paralog | WBGene00000438 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003167 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003000 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00006654 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00002989 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00002988 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00006824 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00015216 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00017644 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00022518 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | lim-4 encodes a LIM homeodomain protein homologous to murine Lhx6 and L3/Lhx7, and to Drosophila ARROWHEAD; LIM-4 is required for differentiation of AWB chemosensory neurons, for several but not all aspects of RID motor neuron differentiation, expression of ser-2, repulsion from chemosensory repellants, SAA neurite outgrowth, and normal locomotion and head foraging; lim-4 is expressed in AWB, RID, RIV, RMDL, RMDR, RMEV, four SAA neurons, and four SIA neurons. | Paper_evidence | WBPaper00003593 | |||
WBPaper00006180 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including cell differentiation; positive regulation of transcription by RNA polymerase II; and serotonin biosynthetic process. Located in nucleus. Expressed in several structures, including ABalpppppa; head muscle; head neurons; lumbar neurons; and somatic nervous system. Is an ortholog of human LHX6 (LIM homeobox 6) and LHX8 (LIM homeobox 8). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZC64.4a | |||||
ZC64.4b | |||||||
ZC64.4c | |||||||
Corresponding_transcript | ZC64.4a.1 | ||||||
ZC64.4b.1 | |||||||
ZC64.4c.1 | |||||||
Other_sequence (14) | |||||||
Associated_feature | WBsf653872 | ||||||
WBsf670378 | |||||||
WBsf670379 | |||||||
WBsf978715 | |||||||
WBsf1004755 | |||||||
WBsf237227 | |||||||
WBsf237228 | |||||||
Gene_product_binds | WBsf979152 | ||||||
WBsf979153 | |||||||
WBsf979156 | |||||||
Transcription_factor | WBTranscriptionFactor000525 | ||||||
Experimental_info (7) | |||||||
Map_info | Map | X | Position | -9.21387 | Error | 0.024615 | |
Positive | Positive_clone | ZC64 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4205 | |||||
4476 | |||||||
Pseudo_map_position | |||||||
Reference (64) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |