WormBase Tree Display for Gene: WBGene00001989
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WBGene00001989 | SMap | S_parent | Sequence | T12A2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | hot-4 | Person_evidence | WBPerson42 | |||||
Sequence_name | T12A2.16 | ||||||||
Molecular_name | T12A2.16a | ||||||||
T12A2.16a.1 | |||||||||
CE30393 | |||||||||
T12A2.16b | |||||||||
CE30394 | |||||||||
T12A2.16b.1 | |||||||||
T12A2.16b.2 | |||||||||
Other_name | CELE_T12A2.16 | Accession_evidence | NDB | BX284603 | |||||
Public_name | hot-4 | ||||||||
DB_info | Database | AceView | gene | 3H313 | |||||
WormQTL | gene | WBGene00001989 | |||||||
WormFlux | gene | WBGene00001989 | |||||||
NDB | locus_tag | CELE_T12A2.16 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001989|UniProtKB=H2KYW7 | |||||||
family | PTHR34722 | ||||||||
NCBI | gene | 175881 | |||||||
RefSeq | protein | NM_171155.7 | |||||||
NM_171874.3 | |||||||||
TREEFAM | TREEFAM_ID | TF315944 | |||||||
TrEMBL | UniProtAcc | H2KYW7 | |||||||
Q8T3D0 | |||||||||
UniProt_GCRP | UniProtAcc | H2KYW7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hot | ||||||||
Allele (87) | |||||||||
Strain | WBStrain00002171 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (4) | |||||||||
Ortholog (24) | |||||||||
Paralog | WBGene00001986 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WBGene00001987 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00001988 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00003849 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00001990 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00044484 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00020489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
Structured_description | Automated_description | Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. Expressed in head and tail. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T12A2.16a | |||||||
T12A2.16b | |||||||||
Corresponding_transcript | T12A2.16a.1 | ||||||||
T12A2.16b.1 | |||||||||
T12A2.16b.2 | |||||||||
Other_sequence | CR03737 | ||||||||
ACC30221_1 | |||||||||
FC539761.1 | |||||||||
CRC06492_1 | |||||||||
Dviv_isotig29746 | |||||||||
JI179008.1 | |||||||||
Acan_isotig10904 | |||||||||
Associated_feature (16) | |||||||||
Experimental_info | RNAi_result | WBRNAi00053154 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005029 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00053152 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram334 | ||||||||
Expr6679 | |||||||||
Expr1027258 | |||||||||
Expr1031157 | |||||||||
Expr1156751 | |||||||||
Expr2012542 | |||||||||
Expr2030781 | |||||||||
Drives_construct | WBCnstr00002925 | ||||||||
WBCnstr00036537 | |||||||||
Construct_product | WBCnstr00036537 | ||||||||
Microarray_results (28) | |||||||||
Expression_cluster (143) | |||||||||
Interaction | WBInteraction000553260 | ||||||||
Map_info | Map | III | Position | -1.40844 | Error | 0.000137 | |||
Positive | Positive_clone | T12A2 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00004498 | ||||||||
Remark | Sequence connection from [Chou JH, Bargmann CI, Sengupta P] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |