WormBase Tree Display for Gene: WBGene00001386

WBGene00001386 Evidence: Paper_evidence: WBPaper00005754
  SMap: S_parent: Sequence: F02A9
  Identity: Version: 1
    Name: CGC_name: far-2
      Sequence_name: F02A9.3
      Molecular_name: F02A9.3
        F02A9.3.1
        CE00134
      Other_name: pes-3 CGC_data_submission
        CELE_F02A9.3 Accession_evidence: NDB BX284603
      Public_name: far-2
    DB_info: Database: AceView gene 3K171
        WormQTL gene WBGene00001386
        WormFlux gene WBGene00001386
        NDB locus_tag CELE_F02A9.3
        Panther gene CAEEL|WormBase=WBGene00001386|UniProtKB=P34383
          family PTHR31418
        NCBI gene 176284
        RefSeq protein NM_066610.8
        SwissProt UniProtAcc P34383
        TREEFAM TREEFAM_ID TF316252
        UniProt_GCRP UniProtAcc P34383
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:24 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: far
    Allele (15)
    Legacy_information: [C.elegansII] NMK. pes-3:lacZ expressed in nuclei of bodywall muscles, vulval muscles. Clone UL#4F5, cosmid ZK506. [Hope 1991; UL]
    Strain: WBStrain00031407
    RNASeq_FPKM (74)
    GO_annotation: 00042052
      00042053
      00042054
      00042055
      00042056
      00108643
    Ortholog (42)
    Paralog: WBGene00001385 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00001391 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015578 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001388 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001387 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001389 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001390 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001392 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: far-2 encodes a protein similar to a class of secreted fatty acid and retinol-binding proteins expressed in parasitic nematodes and secreted in the surrounding tissues of the host; expressed in body wall muscle and vulval cells of adult hermaphrodites, and transcript levels progressively increase during development. Paper_evidence: WBPaper00001469
            WBPaper00005754
            WBPaper00005763
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable fatty acid binding activity and retinol binding activity. Predicted to be located in extracellular region. Expressed in body wall musculature; vulval muscle; and in male. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F02A9.3
    Corresponding_transcript: F02A9.3.1
    Other_sequence (20)
    Associated_feature: WBsf659380
      WBsf993568
      WBsf225513
  Experimental_info: RNAi_result: WBRNAi00030563 Inferred_automatically: RNAi_primary
      WBRNAi00006993 Inferred_automatically: RNAi_primary
      WBRNAi00113974 Inferred_automatically: RNAi_primary
      WBRNAi00043787 Inferred_automatically: RNAi_primary
      WBRNAi00043788 Inferred_automatically: RNAi_primary
      WBRNAi00012762 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1
      Expr2392
      Expr4237
      Expr4238
      Expr1015479
      Expr1030831
      Expr1147763
      Expr2011422
      Expr2029659
    Drives_construct: WBCnstr00011846
      WBCnstr00011847
      WBCnstr00036982
    Construct_product: WBCnstr00011846
      WBCnstr00011847
      WBCnstr00036982
    Microarray_results (20)
    Expression_cluster (230)
    Interaction (247)
    WBProcess: WBbiopr:00000121
  Map_info: Map: III Position: 0.153074 Error: 0.004125
    Positive: Positive_clone: F02A9 Inferred_automatically: From sequence, transcript, pseudogene data
        ZK506
    Mapping_data: Multi_point: 4292
        4293
    Pseudo_map_position
  Reference (13)
  Remark: [Jan Bradley] We have tested fatty acid and retinol binding of 3 of far-1 to far-6; all are expressed and we have assumed the others are able to bind fatty acids based on sequence similarity. There is a slight problem with the gene finder/genome sequence of F15B9.3 as it predicts the far-5 gene to be continuous with the c terminal of a lag-2 gene. We've tried v hard to see if the whole lag 2/far gene is transcribed and it doesn't seem to be but we can find an sl-far gene transcript with specific primers for the c terminal.
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene