WormBase Tree Display for Gene: WBGene00009059
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| WBGene00009059 | SMap | S_parent | Sequence | F22E12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | chw-1 | |||||||
| Sequence_name | F22E12.2 | ||||||||
| Molecular_name | F22E12.2 | ||||||||
| F22E12.2.1 | |||||||||
| CE05696 | |||||||||
| Other_name | CELE_F22E12.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | chw-1 | ||||||||
| DB_info | Database | AceView | gene | 5K943 | |||||
| WormQTL | gene | WBGene00009059 | |||||||
| WormFlux | gene | WBGene00009059 | |||||||
| NDB | locus_tag | CELE_F22E12.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009059|UniProtKB=Q19739 | |||||||
| family | PTHR24072 | ||||||||
| NCBI | gene | 184848 | |||||||
| RefSeq | protein | NM_073285.2 | |||||||
| TREEFAM | TREEFAM_ID | TF321839 | |||||||
| TrEMBL | UniProtAcc | Q19739 | |||||||
| UniProt_GCRP | UniProtAcc | Q19739 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 05 Jan 2005 13:10:39 | WBPerson2970 | Name_change | CGC_name | chw-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | chw | ||||||||
| Allele (28) | |||||||||
| Strain | WBStrain00031576 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00000390 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000424 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003239 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004287 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004357 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019544 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022177 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00012532 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Involved in establishment or maintenance of cell polarity and vulval development. Predicted to be located in plasma membrane. Expressed in several structures, including P3.pa; P3.pp; P4.pa; P4.pp; and P8.pa. Is an ortholog of human RHOU (ras homolog family member U). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F22E12.2 | |||||||
| Corresponding_transcript | F22E12.2.1 | ||||||||
| Other_sequence | Oden_isotig21620 | ||||||||
| CR01151 | |||||||||
| Dviv_isotig24876 | |||||||||
| Oden_isotig24504 | |||||||||
| CRC02711_1 | |||||||||
| Associated_feature | WBsf661629 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00013757 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00108141 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031278 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094825 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045328 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107627 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00108142 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00108140 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12413 | ||||||||
| Expr1020601 | |||||||||
| Expr1033950 | |||||||||
| Expr1149251 | |||||||||
| Expr2010008 | |||||||||
| Expr2028249 | |||||||||
| Drives_construct | WBCnstr00020742 | ||||||||
| WBCnstr00032492 | |||||||||
| Construct_product | WBCnstr00032492 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction | WBInteraction000031287 | ||||||||
| WBInteraction000032007 | |||||||||
| WBInteraction000343952 | |||||||||
| WBInteraction000441076 | |||||||||
| WBInteraction000534753 | |||||||||
| WBInteraction000534754 | |||||||||
| WBInteraction000563423 | |||||||||
| Map_info | Map | V | Position | 2.56276 | Error | 0.001499 | |||
| Positive | Positive_clone | F22E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4678 | |||||||
| 5046 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004196 | ||||||||
| WBPaper00017117 | |||||||||
| WBPaper00025137 | |||||||||
| WBPaper00026100 | |||||||||
| WBPaper00027296 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039146 | |||||||||
| WBPaper00043290 | |||||||||
| WBPaper00047137 | |||||||||
| WBPaper00054187 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
