WormBase Tree Display for Gene: WBGene00006926

WBGene00006926 SMap: S_parent: Sequence: C42D8
  Identity: Version: 1
    Name: CGC_name: vit-2 Person_evidence: WBPerson71
      Sequence_name: C42D8.2
      Molecular_name: C42D8.2
        C42D8.2.1
        CE06950
      Other_name: CELE_C42D8.2 Accession_evidence: NDB BX284606
      Public_name: vit-2
    DB_info: Database: WormQTL gene WBGene00006926
        WormFlux gene WBGene00006926
        NDB locus_tag CELE_C42D8.2
        Panther gene CAEEL|WormBase=WBGene00006926|UniProtKB=P05690
          family PTHR23345
        NCBI gene 180781
        RefSeq protein NM_076467.7
        SwissProt UniProtAcc P05690
        UniProt_GCRP UniProtAcc P05690
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:43 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vit
    Allele (95)
    Legacy_information: Structural gene for vitellogenin yp170B.
      [C.elegansII] NMK. 4.9 kb transcript, specific to adult hermaphrodite intestine, encodes vitellogenin yp170B (67% identity to VIT-5). Extensive promoter analysis. [Speith et al. 1985b; MacMorris et al. 1994; BL]
    Strain (11)
    RNASeq_FPKM (74)
    GO_annotation: 00038891
      00038892
      00038893
      00038894
      00038895
      00038896
      00038897
      00038898
      00115036
      00115037
    Ortholog (64)
    Paralog: WBGene00006925 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00006927 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006928 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006929 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006930 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: vit-2 encodes the vitellogenin homolog YP170; vit-2 is expressed in the adult hermaphrodite intestine and VIT-2 is secreted into the pseudocoelomic space before being taken up by developing oocytes; vit-2 expression is regulated in a sex-, stage-, and tissue-specific manner by the ELT-2/GATA and MAB-3 transcription factors. Paper_evidence: WBPaper00003831
            WBPaper00004538
            WBPaper00032471
            WBPaper00001864
            WBPaper00003452
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 24 Mar 2014 00:00:00
      Automated_description: Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Located in cytoplasmic vesicle; vesicle lumen; and yolk granule. Expressed in embryonic cell; gonad; intestine; oocyte; and pseudocoelom. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C42D8.2
    Corresponding_CDS_history: C42D8.2:wp176
      C42D8.2b:wp271
    Corresponding_transcript: C42D8.2.1
    Other_sequence (264)
    Associated_feature (19)
  Experimental_info: RNAi_result: WBRNAi00095269 Inferred_automatically: RNAi_primary
      WBRNAi00042364 Inferred_automatically: RNAi_primary
      WBRNAi00095273 Inferred_automatically: RNAi_primary
      WBRNAi00063230 Inferred_automatically: RNAi_primary
      WBRNAi00001993 Inferred_automatically: RNAi_primary
      WBRNAi00063231 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr520
      Expr11396
      Expr12138
      Expr12674
      Expr16161
      Expr1015447
      Expr1032943
      Expr1146349
      Expr2018001
      Expr2036137
    Drives_construct (19)
    Construct_product: WBCnstr00000145
      WBCnstr00012417
      WBCnstr00018820
      WBCnstr00021273
      WBCnstr00022596
      WBCnstr00034094
      WBCnstr00041719
    Regulate_expr_cluster: WBPaper00051305:vit-2(ac3)_downregulated
      WBPaper00051305:vit-2(ac3)_upregulated
    Antibody: WBAntibody00000018
    Microarray_results (21)
    Expression_cluster (320)
    Interaction (317)
  Map_info: Map: X Position: -6.18804 Error: 0.002606
    Positive: Positive_clone (2)
    Pseudo_map_position
  Reference: WBPaper00000783
    WBPaper00000803
    WBPaper00000808
    WBPaper00000873
    WBPaper00000907
    WBPaper00001097
    WBPaper00001400
    WBPaper00001415
    WBPaper00001442
    WBPaper00001523
    WBPaper00001567
    WBPaper00001634
    WBPaper00001660
    WBPaper00001720
    WBPaper00001722
    WBPaper00001730
    WBPaper00001841
    WBPaper00001864
    WBPaper00002006
    WBPaper00002292
    WBPaper00002295
    WBPaper00002326
    WBPaper00002443
    WBPaper00002463
    WBPaper00003452
    WBPaper00003474
    WBPaper00003617
    WBPaper00004113
    WBPaper00004137
    WBPaper00005055
    WBPaper00005124
    WBPaper00005295
    WBPaper00005976
    WBPaper00006195
    WBPaper00006232
    WBPaper00006387
    WBPaper00010755
    WBPaper00011236
    WBPaper00012749
    WBPaper00013795
    WBPaper00013957
    WBPaper00014027
    WBPaper00014067
    WBPaper00014144
    WBPaper00014145
    WBPaper00014168
    WBPaper00014175
    WBPaper00014179
    WBPaper00014429
    WBPaper00014492
    WBPaper00014823
    WBPaper00015280
    WBPaper00015440
    WBPaper00015552
    WBPaper00016575
    WBPaper00017915
    WBPaper00020872
    WBPaper00020873
    WBPaper00020944
    WBPaper00021923
    WBPaper00023847
    WBPaper00025088
    WBPaper00026592
    WBPaper00026643
    WBPaper00027024
    WBPaper00027262
    WBPaper00027265
    WBPaper00027309
    WBPaper00027564
    WBPaper00028730
    WBPaper00028782
    WBPaper00030825
    WBPaper00031144
    WBPaper00032283
    WBPaper00033090
    WBPaper00039871
    WBPaper00041022
    WBPaper00042603
    WBPaper00043016
    WBPaper00047369
    WBPaper00047391
    WBPaper00049345
    WBPaper00049383
    WBPaper00049828
    WBPaper00050313
    WBPaper00051022
    WBPaper00051305
    WBPaper00051607
    WBPaper00053100
    WBPaper00054076
    WBPaper00054186
    WBPaper00055815
    WBPaper00056620
    WBPaper00056679
    WBPaper00056956
    WBPaper00057438
    WBPaper00059031
    WBPaper00059111
    WBPaper00059191
    WBPaper00059854
    WBPaper00059995
    WBPaper00060399
    WBPaper00061341
    WBPaper00061698
    WBPaper00062002
    WBPaper00062412
    WBPaper00062513
    WBPaper00063930
    WBPaper00064125
    WBPaper00064154
    WBPaper00064564
    WBPaper00065026
    WBPaper00065275
    WBPaper00065572
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene