WormBase Tree Display for Gene: WBGene00001395
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WBGene00001395 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | fat-3 | |||||||
Sequence_name | W08D2.4 | ||||||||
Molecular_name (12) | |||||||||
Other_name | CELE_W08D2.4 | Accession_evidence | NDB | BX284604 | |||||
Public_name | fat-3 | ||||||||
DB_info | Database (13) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fat | ||||||||
Allele (56) | |||||||||
Legacy_information | [Barnes TM] fat for FATty acid metabolism. Encodes predicted enzyme for beta-oxidation of fatty acids. Predicted gene C17G10.8 | ||||||||
Strain | WBStrain00036068 | ||||||||
WBStrain00004012 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (30) | |||||||||
Ortholog (41) | |||||||||
Paralog | WBGene00001396 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | fat-3 encodes a delta-6 fatty acid desaturase ('linoleoyl-CoA desaturase') containing an N-terminal cytochrome b5 domain that is orthologous to the vertebrate fatty acid desaturases (FADS); FAT-3 expressed in yeast uses linoleic and alpha-linolenic acid as substrates; FAT-3 is absolutely required in vivo for synthesis of delta-6 fatty acids, and also required for fully normal synthesis of C20 fatty acids; FAT-3 is required for a normally fast growth rate and movement speed, and for normal defecation rhythms and fertility; fat-3 is also required for regulation of basal innate immunity. | Paper_evidence (9) | ||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 16 May 2014 00:00:00 | ||||||||
Automated_description | Enables stearoyl-CoA 9-desaturase activity. Involved in several processes, including egg-laying behavior; signal release; and system process. Predicted to be located in membrane. Expressed in body wall musculature; head neurons; intestine; pharynx; and tail neurons. Used to study alcohol use disorder and lipid metabolism disorder. Is an ortholog of human FADS2 (fatty acid desaturase 2) and FADS3 (fatty acid desaturase 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00045655 | ||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 05 Jun 2019 00:00:00 | ||||||||
DOID:3146 | Homo sapiens | Paper_evidence | WBPaper00060352 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 21 Jan 2021 00:00:00 | ||||||||
Potential_model | DOID:12930 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3575) | |||||
Models_disease_asserted | WBDOannot00000699 | ||||||||
WBDOannot00000845 | |||||||||
Molecular_info | Corresponding_CDS | W08D2.4a | |||||||
W08D2.4b | |||||||||
W08D2.4c | |||||||||
W08D2.4d | |||||||||
Corresponding_transcript | W08D2.4a.1 | ||||||||
W08D2.4b.1 | |||||||||
W08D2.4c.1 | |||||||||
W08D2.4d.1 | |||||||||
Other_sequence (97) | |||||||||
Associated_feature | WBsf646256 | ||||||||
WBsf660531 | |||||||||
WBsf660532 | |||||||||
WBsf978983 | |||||||||
WBsf228878 | |||||||||
Experimental_info | RNAi_result (16) | ||||||||
Expr_pattern | Expr2386 | ||||||||
Expr1028132 | |||||||||
Expr1030835 | |||||||||
Expr1158509 | |||||||||
Expr2011436 | |||||||||
Expr2029674 | |||||||||
Drives_construct | WBCnstr00010806 | ||||||||
WBCnstr00019118 | |||||||||
WBCnstr00036974 | |||||||||
Construct_product | WBCnstr00010806 | ||||||||
WBCnstr00036974 | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (224) | |||||||||
Interaction (172) | |||||||||
Anatomy_function | WBbtf0243 | ||||||||
WBbtf0244 | |||||||||
WBbtf0245 | |||||||||
WBbtf0246 | |||||||||
WBbtf0247 | |||||||||
WBbtf0248 | |||||||||
WBbtf0249 | |||||||||
WBProcess | WBbiopr:00000002 | ||||||||
WBbiopr:00000039 | |||||||||
WBbiopr:00000121 | |||||||||
Map_info | Map | IV | Position | 4.42122 | Error | 0.000463 | |||
Positive | Positive_clone | W08D2 | Person_evidence | WBPerson681 | |||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Mapping_data | Multi_point | 4299 | |||||||
4300 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003032 | ||||||||
WBPaper00003182 | |||||||||
WBPaper00003387 | |||||||||
WBPaper00003999 | |||||||||
WBPaper00005233 | |||||||||
WBPaper00005728 | |||||||||
WBPaper00005757 | |||||||||
WBPaper00006282 | |||||||||
WBPaper00010050 | |||||||||
WBPaper00011482 | |||||||||
WBPaper00016648 | |||||||||
WBPaper00016674 | |||||||||
WBPaper00018849 | |||||||||
WBPaper00019378 | |||||||||
WBPaper00024089 | |||||||||
WBPaper00024813 | |||||||||
WBPaper00025114 | |||||||||
WBPaper00026481 | |||||||||
WBPaper00026800 | |||||||||
WBPaper00027029 | |||||||||
WBPaper00027109 | |||||||||
WBPaper00027280 | |||||||||
WBPaper00028207 | |||||||||
WBPaper00028527 | |||||||||
WBPaper00028690 | |||||||||
WBPaper00029015 | |||||||||
WBPaper00029292 | |||||||||
WBPaper00030383 | |||||||||
WBPaper00031146 | |||||||||
WBPaper00031342 | |||||||||
WBPaper00031343 | |||||||||
WBPaper00031804 | |||||||||
WBPaper00031896 | |||||||||
WBPaper00032370 | |||||||||
WBPaper00032381 | |||||||||
WBPaper00033016 | |||||||||
WBPaper00033126 | |||||||||
WBPaper00033136 | |||||||||
WBPaper00033328 | |||||||||
WBPaper00033362 | |||||||||
WBPaper00034082 | |||||||||
WBPaper00034662 | |||||||||
WBPaper00035365 | |||||||||
WBPaper00038126 | |||||||||
WBPaper00038127 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00039558 | |||||||||
WBPaper00039970 | |||||||||
WBPaper00040013 | |||||||||
WBPaper00042178 | |||||||||
WBPaper00042257 | |||||||||
WBPaper00044103 | |||||||||
WBPaper00044578 | |||||||||
WBPaper00044659 | |||||||||
WBPaper00045624 | |||||||||
WBPaper00045865 | |||||||||
WBPaper00048588 | |||||||||
WBPaper00048988 | |||||||||
WBPaper00049152 | |||||||||
WBPaper00049988 | |||||||||
WBPaper00051745 | |||||||||
WBPaper00053348 | |||||||||
WBPaper00053474 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00056988 | |||||||||
WBPaper00058665 | |||||||||
WBPaper00058798 | |||||||||
WBPaper00059960 | |||||||||
WBPaper00060352 | |||||||||
WBPaper00060484 | |||||||||
WBPaper00060921 | |||||||||
WBPaper00063799 | |||||||||
WBPaper00063982 | |||||||||
WBPaper00064105 | |||||||||
WBPaper00064202 | |||||||||
WBPaper00064505 | |||||||||
WBPaper00064516 | |||||||||
WBPaper00064652 | |||||||||
WBPaper00064721 | |||||||||
WBPaper00065123 | |||||||||
WBPaper00065988 | |||||||||
WBPaper00066260 | |||||||||
Remark | C17G10.8 link removed by agreement [sdm 0107] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |