WormBase Tree Display for Gene: WBGene00015035
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WBGene00015035 | SMap | S_parent | Sequence | B0212 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | otpl-1 | |||||||
Sequence_name | B0212.1 | ||||||||
Molecular_name | B0212.1a | ||||||||
B0212.1a.1 | |||||||||
CE44425 | |||||||||
B0212.1b | |||||||||
CE49039 | |||||||||
B0212.1c | |||||||||
CE48561 | |||||||||
B0212.1b.1 | |||||||||
B0212.1c.1 | |||||||||
Other_name | CELE_B0212.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | otpl-1 | ||||||||
DB_info | Database | AceView | gene | 4E341 | |||||
WormQTL | gene | WBGene00015035 | |||||||
WormFlux | gene | WBGene00015035 | |||||||
NDB | locus_tag | CELE_B0212.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00015035|UniProtKB=U4PEQ1 | |||||||
family | PTHR21522 | ||||||||
NCBI | gene | 181841 | |||||||
RefSeq | protein | NM_001392283.1 | |||||||
NM_001307511.1 | |||||||||
NM_067973.4 | |||||||||
TrEMBL | UniProtAcc | U4PBH5 | |||||||
U4PEQ1 | |||||||||
O45067 | |||||||||
UniProt_GCRP | UniProtAcc | U4PEQ1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 07 Apr 2008 11:28:34 | WBPerson2970 | Name_change | CGC_name | otpl-1 | ||||
3 | 27 Sep 2013 10:35:05 | WBPerson4025 | Event | Acquires_merge | WBGene00044111 | ||||
Acquires_merge | WBGene00044111 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | otpl | ||||||||
Allele (180) | |||||||||
Strain | WBStrain00050964 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Ortholog (40) | |||||||||
Paralog | WBGene00010403 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00017034 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00018478 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00018479 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00018480 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00017449 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00018477 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | otpl-1 encodes an ortholog of otopetrins such as human OTOP1 (OMIM:607806), OTOP2 (OMIM:607827), and OTOP3 (OMIM:607828), along with other homologs in fish and insects (such as crustacean OTOPLb); otopetrins are predicted to have 12 transmembrane helices; by homology with OTOP1 and OTOPLb, OTPL-1 might regulate intracellular calcium fluxes during extracellular stimuli, promote extracellular calcium carbonate biomineralization, or both; OTPL-1's paralogs include OTPL-2 through OTPL-8. | Paper_evidence | WBPaper00031620 | |||||
WBPaper00031621 | |||||||||
WBPaper00031622 | |||||||||
WBPaper00031623 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 04 Apr 2008 00:00:00 | ||||||||
Automated_description | Predicted to enable proton channel activity. Predicted to be involved in proton transmembrane transport. Predicted to be located in plasma membrane. Is an ortholog of human OTOP1 (otopetrin 1); OTOP2 (otopetrin 2); and OTOP3 (otopetrin 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | B0212.1a | |||||||
B0212.1b | |||||||||
B0212.1c | |||||||||
Corresponding_CDS_history | B0212.1:wp210 | ||||||||
Corresponding_transcript | B0212.1a.1 | ||||||||
B0212.1b.1 | |||||||||
B0212.1c.1 | |||||||||
Other_sequence | HGC05023_1 | ||||||||
Tcol_isotig13542 | |||||||||
GPC01423_1 | |||||||||
Tcir_isotig14099 | |||||||||
GP02880 | |||||||||
Acan_isotig15944 | |||||||||
HG09223 | |||||||||
Associated_feature | WBsf645877 | ||||||||
WBsf659784 | |||||||||
WBsf995984 | |||||||||
WBsf995985 | |||||||||
WBsf995986 | |||||||||
WBsf1017084 | |||||||||
Experimental_info | RNAi_result | WBRNAi00009576 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038723 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1010869 | ||||||||
Expr1017170 | |||||||||
Expr1142933 | |||||||||
Expr1142938 | |||||||||
Expr2014657 | |||||||||
Expr2032890 | |||||||||
Microarray_results (34) | |||||||||
Expression_cluster (123) | |||||||||
Interaction (13) | |||||||||
Map_info | Map | IV | Position | -3.14057 | Error | 0.003476 | |||
Positive | Positive_clone | B0212 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031620 | ||||||||
WBPaper00031622 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00056048 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |