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WormBase Tree Display for Gene: WBGene00003623

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Name Class

WBGene00003623EvidencePaper_evidenceWBPaper00003416
WBPaper00004124
WBPaper00004329
SMapS_parentSequenceF11C1
IdentityVersion1
NameCGC_namenhr-25Person_evidenceWBPerson600
Sequence_nameF11C1.6
Molecular_nameF11C1.6a
F11C1.6a.1
CE03191
F11C1.6b
CE35856
F11C1.6a.2
F11C1.6b.1
Other_nameCELE_F11C1.6Accession_evidenceNDBBX284606
Public_namenhr-25
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (94)
Legacy_information[M Asahina] jm2389 is mutagenized using TMP/UV and detected a deletion by PCR. This removes the coding region from Gly40 in the P-box of the first zinc finger motif to Ser377 in the middle of the conserved region II within the LBD (ref. Asahina M et al. 2000 The conserved nuclear receptor Ftz-F1 is required for embryogenesis, moulting and reproduction in Caenorhabditis elegans. Genes to Cells 5: 711). Phenotype is homozygous embryonic lethal at 1.5-fold to 2-fold stage. Balanced with +/szT1[lon-2(e678)] I; nDf19/szT1 X (strain MT1401)
Strain (13)
RNASeq_FPKM (74)
GO_annotation (26)
Ortholog (52)
Paralog (17)
Structured_descriptionConcise_descriptionnhr-25 encodes a nuclear hormone receptor orthologous to Drosophila Ftz-F1; NHR-25 is required for embryogenesis, molting, vulval and gonadal development, and hypodermal expression of acn-1; nhr-25 is expressed in gonads and loaded into embryos as a maternal transcript; nhr-25 is zygotically expressed in progeny of the E cell, and then in hypodermis and gut; the role of NHR-25 in molting may be evolutionarily conserved between nematodes and arthopods.Paper_evidenceWBPaper00004329
WBPaper00006295
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables armadillo repeat domain binding activity. Involved in molting cycle and positive regulation of nematode male tail tip morphogenesis. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in several structures, including excretory system; gonad; hypodermal cell; tail; and vulval precursor cell. Human ortholog(s) of this gene implicated in several diseases, including Zellweger syndrome; gonadal dysgenesis (multiple); and primary ovarian insufficiency 7. Is an ortholog of human NR5A2 (nuclear receptor subfamily 5 group A member 2).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0111764Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7983)
DOID:905Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7983)
DOID:0070169Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7983)
DOID:0111772Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7983)
DOID:0080864Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7983)
DOID:219Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:7984)
Molecular_infoCorresponding_CDSF11C1.6a
F11C1.6b
Corresponding_transcriptF11C1.6a.1
F11C1.6a.2
F11C1.6b.1
Other_sequence (13)
Associated_feature (24)
Gene_product_binds (378)
Transcription_factorWBTranscriptionFactor000597
Experimental_infoRNAi_resultWBRNAi00038535Inferred_automaticallyRNAi_primary
WBRNAi00098826Inferred_automaticallyRNAi_primary
WBRNAi00084179Inferred_automaticallyRNAi_primary
WBRNAi00038538Inferred_automaticallyRNAi_primary
WBRNAi00099064Inferred_automaticallyRNAi_primary
WBRNAi00091266Inferred_automaticallyRNAi_primary
WBRNAi00111642Inferred_automaticallyRNAi_primary
WBRNAi00104695Inferred_automaticallyRNAi_primary
WBRNAi00104700Inferred_automaticallyRNAi_primary
WBRNAi00023190Inferred_automaticallyRNAi_primary
WBRNAi00106751Inferred_automaticallyRNAi_primary
WBRNAi00104684Inferred_automaticallyRNAi_primary
WBRNAi00095877Inferred_automaticallyRNAi_primary
WBRNAi00068497Inferred_automaticallyRNAi_primary
WBRNAi00069596Inferred_automaticallyRNAi_primary
WBRNAi00084427Inferred_automaticallyRNAi_primary
WBRNAi00104682Inferred_automaticallyRNAi_primary
WBRNAi00106473Inferred_automaticallyRNAi_primary
WBRNAi00104679Inferred_automaticallyRNAi_primary
WBRNAi00107448Inferred_automaticallyRNAi_primary
WBRNAi00107391Inferred_automaticallyRNAi_primary
WBRNAi00096435Inferred_automaticallyRNAi_primary
WBRNAi00069608Inferred_automaticallyRNAi_primary
WBRNAi00084178Inferred_automaticallyRNAi_primary
WBRNAi00085753Inferred_automaticallyRNAi_primary
WBRNAi00104676Inferred_automaticallyRNAi_primary
WBRNAi00098820Inferred_automaticallyRNAi_primary
WBRNAi00069605Inferred_automaticallyRNAi_primary
WBRNAi00115650Inferred_automaticallyRNAi_primary
WBRNAi00115649Inferred_automaticallyRNAi_primary
WBRNAi00065941Inferred_automaticallyRNAi_primary
WBRNAi00106465Inferred_automaticallyRNAi_primary
WBRNAi00084425Inferred_automaticallyRNAi_primary
WBRNAi00104686Inferred_automaticallyRNAi_primary
WBRNAi00104696Inferred_automaticallyRNAi_primary
WBRNAi00068496Inferred_automaticallyRNAi_primary
WBRNAi00084175Inferred_automaticallyRNAi_primary
WBRNAi00008639Inferred_automaticallyRNAi_primary
WBRNAi00044365Inferred_automaticallyRNAi_primary
WBRNAi00104674Inferred_automaticallyRNAi_primary
WBRNAi00023702Inferred_automaticallyRNAi_primary
WBRNAi00068937Inferred_automaticallyRNAi_primary
WBRNAi00104677Inferred_automaticallyRNAi_primary
WBRNAi00099069Inferred_automaticallyRNAi_primary
WBRNAi00069595Inferred_automaticallyRNAi_primary
WBRNAi00107485Inferred_automaticallyRNAi_primary
WBRNAi00069603Inferred_automaticallyRNAi_primary
WBRNAi00063679Inferred_automaticallyRNAi_primary
WBRNAi00099066Inferred_automaticallyRNAi_primary
WBRNAi00107378Inferred_automaticallyRNAi_primary
WBRNAi00098838Inferred_automaticallyRNAi_primary
WBRNAi00070208Inferred_automaticallyRNAi_primary
WBRNAi00084423Inferred_automaticallyRNAi_primary
WBRNAi00069609Inferred_automaticallyRNAi_primary
WBRNAi00099070Inferred_automaticallyRNAi_primary
WBRNAi00084177Inferred_automaticallyRNAi_primary
WBRNAi00084419Inferred_automaticallyRNAi_primary
WBRNAi00069602Inferred_automaticallyRNAi_primary
WBRNAi00084180Inferred_automaticallyRNAi_primary
WBRNAi00104698Inferred_automaticallyRNAi_primary
WBRNAi00068493Inferred_automaticallyRNAi_primary
WBRNAi00104689Inferred_automaticallyRNAi_primary
WBRNAi00066783Inferred_automaticallyRNAi_primary
WBRNAi00106484Inferred_automaticallyRNAi_primary
WBRNAi00096352Inferred_automaticallyRNAi_primary
WBRNAi00038534Inferred_automaticallyRNAi_primary
WBRNAi00084174Inferred_automaticallyRNAi_primary
WBRNAi00098829Inferred_automaticallyRNAi_primary
WBRNAi00096260Inferred_automaticallyRNAi_primary
WBRNAi00069607Inferred_automaticallyRNAi_primary
WBRNAi00084181Inferred_automaticallyRNAi_primary
WBRNAi00096518Inferred_automaticallyRNAi_primary
WBRNAi00098836Inferred_automaticallyRNAi_primary
WBRNAi00104678Inferred_automaticallyRNAi_primary
WBRNAi00069598Inferred_automaticallyRNAi_primary
WBRNAi00115646Inferred_automaticallyRNAi_primary
WBRNAi00115648Inferred_automaticallyRNAi_primary
WBRNAi00104680Inferred_automaticallyRNAi_primary
WBRNAi00104687Inferred_automaticallyRNAi_primary
WBRNAi00107569Inferred_automaticallyRNAi_primary
WBRNAi00096183Inferred_automaticallyRNAi_primary
WBRNAi00069606Inferred_automaticallyRNAi_primary
WBRNAi00084176Inferred_automaticallyRNAi_primary
WBRNAi00106469Inferred_automaticallyRNAi_primary
WBRNAi00115647Inferred_automaticallyRNAi_primary
WBRNAi00069600Inferred_automaticallyRNAi_primary
WBRNAi00084421Inferred_automaticallyRNAi_primary
WBRNAi00099065Inferred_automaticallyRNAi_primary
WBRNAi00104694Inferred_automaticallyRNAi_primary
WBRNAi00063752Inferred_automaticallyRNAi_primary
WBRNAi00023990Inferred_automaticallyRNAi_primary
WBRNAi00115871Inferred_automaticallyRNAi_primary
WBRNAi00098828Inferred_automaticallyRNAi_primary
WBRNAi00084173Inferred_automaticallyRNAi_primary
WBRNAi00038540Inferred_automaticallyRNAi_primary
WBRNAi00107098Inferred_automaticallyRNAi_primary
WBRNAi00099067Inferred_automaticallyRNAi_primary
WBRNAi00104690Inferred_automaticallyRNAi_primary
WBRNAi00075416Inferred_automaticallyRNAi_primary
WBRNAi00104697Inferred_automaticallyRNAi_primary
WBRNAi00084424Inferred_automaticallyRNAi_primary
WBRNAi00084768Inferred_automaticallyRNAi_primary
WBRNAi00096029Inferred_automaticallyRNAi_primary
WBRNAi00099063Inferred_automaticallyRNAi_primary
WBRNAi00104692Inferred_automaticallyRNAi_primary
WBRNAi00104685Inferred_automaticallyRNAi_primary
WBRNAi00095954Inferred_automaticallyRNAi_primary
WBRNAi00069610Inferred_automaticallyRNAi_primary
WBRNAi00104675Inferred_automaticallyRNAi_primary
WBRNAi00069604Inferred_automaticallyRNAi_primary
WBRNAi00063750Inferred_automaticallyRNAi_primary
WBRNAi00099068Inferred_automaticallyRNAi_primary
WBRNAi00098827Inferred_automaticallyRNAi_primary
WBRNAi00106480Inferred_automaticallyRNAi_primary
WBRNAi00096616Inferred_automaticallyRNAi_primary
WBRNAi00068495Inferred_automaticallyRNAi_primary
WBRNAi00038536Inferred_automaticallyRNAi_primary
WBRNAi00084422Inferred_automaticallyRNAi_primary
WBRNAi00098837Inferred_automaticallyRNAi_primary
WBRNAi00068494Inferred_automaticallyRNAi_primary
WBRNAi00084426Inferred_automaticallyRNAi_primary
WBRNAi00038539Inferred_automaticallyRNAi_primary
WBRNAi00104688Inferred_automaticallyRNAi_primary
WBRNAi00104699Inferred_automaticallyRNAi_primary
WBRNAi00107146Inferred_automaticallyRNAi_primary
WBRNAi00104681Inferred_automaticallyRNAi_primary
WBRNAi00104691Inferred_automaticallyRNAi_primary
WBRNAi00095564Inferred_automaticallyRNAi_primary
WBRNAi00063689Inferred_automaticallyRNAi_primary
WBRNAi00063641Inferred_automaticallyRNAi_primary
WBRNAi00096106Inferred_automaticallyRNAi_primary
WBRNAi00104693Inferred_automaticallyRNAi_primary
WBRNAi00065942Inferred_automaticallyRNAi_primary
WBRNAi00075404Inferred_automaticallyRNAi_primary
WBRNAi00023411Inferred_automaticallyRNAi_primary
WBRNAi00069599Inferred_automaticallyRNAi_primary
WBRNAi00069601Inferred_automaticallyRNAi_primary
WBRNAi00069597Inferred_automaticallyRNAi_primary
WBRNAi00025078Inferred_automaticallyRNAi_primary
WBRNAi00099071Inferred_automaticallyRNAi_primary
WBRNAi00107294Inferred_automaticallyRNAi_primary
WBRNAi00038537Inferred_automaticallyRNAi_primary
WBRNAi00104683Inferred_automaticallyRNAi_primary
Expr_pattern (27)
Drives_construct (13)
Construct_product (13)
Regulate_expr_clusterWBPaper00045015:nhr-25(RNAi)_downregulated
WBPaper00045015:nhr-25(RNAi)_upregulated
AntibodyWBAntibody00000832
WBAntibody00002489
Microarray_results (31)
Expression_cluster (213)
Interaction (111)
Product_binds_matrixWBPmat00005568
WBPmat00005572
Map_infoMapXPosition9.49412Error0.083721
PositivePositive_cloneF11C1Person_evidenceWBPerson29
Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4522
4883
5332
Pseudo_map_position
Reference (96)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene