WormBase Tree Display for Gene: WBGene00008260
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WBGene00008260 | SMap | S_parent | Sequence | C52G5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name (4) | |||||||||
DB_info | Database | AceView | gene | XN463 | |||||
WormQTL | gene | WBGene00008260 | |||||||
WormFlux | gene | WBGene00008260 | |||||||
NDB | locus_tag | CELE_C52G5.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00008260|UniProtKB=Q18793 | |||||||
family | PTHR15854 | ||||||||
NCBI | gene | 181420 | |||||||
RefSeq | protein | NM_077738.9 | |||||||
TrEMBL | UniProtAcc | Q18793 | |||||||
UniProt_GCRP | UniProtAcc | Q18793 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (35) | |||||||||
Strain | WBStrain00035280 | ||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (34) | |||||||||
Paralog | WBGene00003104 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00016196 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00015794 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00012143 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00008993 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00044557 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Enriched in several structures, including PLM; germline precursor cell; hypodermis; interfacial epithelial cell; and somatic gonad precursor based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and proteomic studies. Is affected by nineteen chemicals including aldicarb; D-glucopyranose; and D-glucose based on microarray; RNA-seq; and proteomic studies. Human THAP4 enables several functions, including heme binding activity; identical protein binding activity; and peroxynitrite isomerase activity. Is predicted to encode a protein with the following domains: THAP4-like, heme-binding beta-barrel domain; Calycin; and Nitrobindin family. Is an ortholog of human THAP4 (THAP domain containing 4). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C52G5.2 | |||||||
Corresponding_transcript | C52G5.2.1 | ||||||||
Other_sequence | FC816991.1 | ||||||||
HGC01104_1 | |||||||||
Tcol_isotig03587 | |||||||||
Name_isotig04203 | |||||||||
Dviv_isotig13069 | |||||||||
Tcol_isotig03583 | |||||||||
FG974122.1 | |||||||||
Hbac_isotig03960 | |||||||||
JI173474.1 | |||||||||
MP01208 | |||||||||
EW742147.1 | |||||||||
Oden_isotig12592 | |||||||||
HBC04293_1 | |||||||||
Tcol_isotig03582 | |||||||||
TVC01316_1 | |||||||||
FC811456.1 | |||||||||
Tcol_isotig03584 | |||||||||
MP01193 | |||||||||
Dviv_isotig13070 | |||||||||
EX915636.1 | |||||||||
MP01214 | |||||||||
CJC05438_1 | |||||||||
HG02079 | |||||||||
FC817811.1 | |||||||||
Tcol_isotig26366 | |||||||||
NAC00076_1 | |||||||||
RSC02806_1 | |||||||||
RS06150 | |||||||||
ACC12180_1 | |||||||||
FC812196.1 | |||||||||
SRC05333_1 | |||||||||
HBC26601_1 | |||||||||
Oden_isotig12593 | |||||||||
OOC00194_1 | |||||||||
MH07092 | |||||||||
MPC01104_1 | |||||||||
Tcol_isotig03589 | |||||||||
Dviv_isotig13071 | |||||||||
Acan_isotig11880 | |||||||||
Tcol_isotig03585 | |||||||||
MP01194 | |||||||||
Tcol_isotig03586 | |||||||||
PPC07133_1 | |||||||||
TV01490 | |||||||||
Tcol_isotig03588 | |||||||||
ES743744.1 | |||||||||
EW742467.1 | |||||||||
MP01217 | |||||||||
MHC04269_1 | |||||||||
MP01201 | |||||||||
Associated_feature (15) | |||||||||
Experimental_info | RNAi_result | WBRNAi00002344 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012327 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00043053 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030092 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092963 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram298 | ||||||||
Expr7769 | |||||||||
Expr1020644 | |||||||||
Expr1033587 | |||||||||
Expr1147014 | |||||||||
Expr2001870 | |||||||||
Expr2020096 | |||||||||
Drives_construct | WBCnstr00001211 | ||||||||
WBCnstr00012914 | |||||||||
WBCnstr00033106 | |||||||||
Construct_product | WBCnstr00033106 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (215) | |||||||||
Interaction (142) | |||||||||
Map_info | Positive | Positive_clone | C52G5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | X | 8.51436 | |||||||
Reference | WBPaper00030657 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Method | Gene |