WormBase Tree Display for Gene: WBGene00009731
expand all nodes | collapse all nodes | view schema
WBGene00009731 | SMap | S_parent | Sequence | F45G2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | exo-1 | Person_evidence | WBPerson8161 | |||||
Sequence_name | F45G2.3 | ||||||||
Molecular_name | F45G2.3 | ||||||||
F45G2.3.1 | |||||||||
CE28728 | |||||||||
Other_name | CELE_F45G2.3 | Accession_evidence | NDB | BX284603 | |||||
Public_name | exo-1 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 23 Mar 2009 10:34:01 | WBPerson9133 | Name_change | CGC_name | exo-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | exo | ||||||||
Allele (45) | |||||||||
Strain | WBStrain00034463 | ||||||||
WBStrain00028633 | |||||||||
WBStrain00047360 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (26) | |||||||||
Contained_in_operon | CEOP3788 | ||||||||
Ortholog (41) | |||||||||
Paralog | WBGene00000794 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00019004 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00020442 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | exo-1 encodes a 5'-3' exonuclease; by homology, EXO-1 is predicted to play a role in DNA metabolic processes, including recombination, double-strand break repair and DNA mismatch repair. | Paper_evidence | WBPaper00037751 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 13 Apr 2011 00:00:00 | ||||||||
Automated_description | Predicted to enable 5'-3' DNA exonuclease activity and 5'-flap endonuclease activity. Predicted to be involved in DNA recombination and mismatch repair. Predicted to be located in nucleus. Is an ortholog of human EXO1 (exonuclease 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F45G2.3 | |||||||
Corresponding_CDS_history | F45G2.3:wp58 | ||||||||
Corresponding_transcript | F45G2.3.1 | ||||||||
Other_sequence | CJC02709_1 | ||||||||
PSC02218_1 | |||||||||
JI165880.1 | |||||||||
FD517231.1 | |||||||||
CRC03639_1 | |||||||||
BXC00122_1 | |||||||||
Tcir_isotig05560 | |||||||||
TM02945 | |||||||||
Acan_isotig17459 | |||||||||
Oden_isotig17607 | |||||||||
Acan_isotig12135 | |||||||||
GW410483.1 | |||||||||
EL888769.1 | |||||||||
CSC01342_1 | |||||||||
Associated_feature | WBsf645714 | ||||||||
WBsf994888 | |||||||||
WBsf226007 | |||||||||
Experimental_info | RNAi_result | WBRNAi00006004 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007873 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047436 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015041 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097145 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1023799 | ||||||||
Expr1034257 | |||||||||
Expr1151277 | |||||||||
Expr2011396 | |||||||||
Expr2029632 | |||||||||
Drives_construct | WBCnstr00031959 | ||||||||
Construct_product | WBCnstr00031959 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (126) | |||||||||
Interaction (109) | |||||||||
Map_info | Map | III | Position | 21.2134 | Error | 6.3e-05 | |||
Positive | Positive_clone | F45G2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00034413 | ||||||||
WBPaper00036708 | |||||||||
WBPaper00037751 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00042018 | |||||||||
WBPaper00042392 | |||||||||
WBPaper00043790 | |||||||||
WBPaper00051412 | |||||||||
WBPaper00053104 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00057769 | |||||||||
WBPaper00058681 | |||||||||
WBPaper00061557 | |||||||||
WBPaper00064526 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |