WormBase Tree Display for Gene: WBGene00002253

WBGene00002253 SMap: S_parent: Sequence: F40F4
  Identity: Version: 1
    Name: CGC_name: lbp-1 Person_evidence: WBPerson492
      Sequence_name: F40F4.3
      Molecular_name: F40F4.3
        F40F4.3.1
        CE04533
      Other_name: CELE_F40F4.3 Accession_evidence: NDB BX284606
      Public_name: lbp-1
    DB_info: Database: AceView gene XD879
        WormQTL gene WBGene00002253
        WormFlux gene WBGene00002253
        NDB locus_tag CELE_F40F4.3
        Panther gene CAEEL|WormBase=WBGene00002253|UniProtKB=Q20223
          family PTHR22725
        NCBI gene 180616
        RefSeq protein NM_076156.8
        SwissProt UniProtAcc Q20223
        UniProt_GCRP UniProtAcc Q20223
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:27 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lbp
    Allele: WBVar01132596
      WBVar01132597
      WBVar01132598
      WBVar01132599
      WBVar01486655
      WBVar02125422
      WBVar01499636
      WBVar02047738
      WBVar01132595
    Strain: WBStrain00037446
    RNASeq_FPKM (74)
    GO_annotation: 00067527
      00067528
      00067529
      00110318
    Ortholog (44)
    Paralog: WBGene00002259 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00002257 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00002260 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00021486 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00002254 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00002256 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00002255 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description (2)
  Molecular_info: Corresponding_CDS: F40F4.3
    Corresponding_transcript: F40F4.3.1
    Other_sequence: GW408050.1
      EX911950.1
      CJC04944_1
      FC815663.1
      EX012395.1
      EX916138.1
      HBC13338_1
      Acan_isotig13823
      Hbac_isotig05256
      Tcol_isotig12614
      SRC07920_1
      FG972883.1
      ES410970.1
      GW408206.1
      ACC13627_1
      EX560696.1
      EX009447.1
      HBC00405_1
      SRC10128_1
      FD516335.1
      FC550461.1
      Name_isotig00468
      FD515039.1
      ES410325.1
      ES740644.1
      AAC00631_1
      HGC00113_1
      Oden_isotig00697
      FD514684.1
      CJC01192_1
      EY460165.1
      CRC05163_1
      CRC01771_1
      HGC00113_2
      EX911596.1
      FD514373.1
      ES743102.1
      Dviv_isotig07787
      BUC01137_1
      AYC01690_1
      EX915388.1
      EX915774.1
      FC553118.1
      ES410524.1
      EX915833.1
      Dviv_isotig07783
      FM207676.1
      ES409956.1
      CBC02337_1
      EX009943.1
      SC00336
      Name_isotig00467
      Dviv_isotig07788
      DN190796.1
      GR978168.1
      SR00858
      HG02677
      CR04961
      EX911807.1
      FD514031.1
      CR00487
      CSC00474_1
      BXC01011_1
      HG03342
      FC816861.1
      DW718207.1
      FC815835.1
      AE00786
      GW406824.1
      FG972048.1
      Dviv_isotig07785
      SRC01635_1
      EX012044.1
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00102642 Inferred_automatically: RNAi_primary
      WBRNAi00014657 Inferred_automatically: RNAi_primary
      WBRNAi00046865 Inferred_automatically: RNAi_primary
      WBRNAi00088954 Inferred_automatically: RNAi_primary
      WBRNAi00032032 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr6010
      Expr1031327
      Expr1150732
      Expr2013018
      Expr2031250
    Drives_construct: WBCnstr00003451
      WBCnstr00008651
      WBCnstr00020895
      WBCnstr00020905
      WBCnstr00020919
      WBCnstr00020920
      WBCnstr00020921
      WBCnstr00020929
      WBCnstr00021437
      WBCnstr00036358
    Construct_product: WBCnstr00036358
    Microarray_results (13)
    Expression_cluster (260)
    Interaction (36)
  Map_info: Map: X Position: -10.6531
    Positive: Positive_clone: F40F4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003911
    WBPaper00005122
    WBPaper00012717
    WBPaper00016914
    WBPaper00023807
    WBPaper00025114
    WBPaper00026800
    WBPaper00027244
    WBPaper00027365
    WBPaper00027616
    WBPaper00031723
    WBPaper00032325
    WBPaper00040135
    WBPaper00041973
    WBPaper00042257
    WBPaper00062488
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene