WormBase Tree Display for Gene: WBGene00055320

WBGene00055320 SMap: S_parent: Sequence: Crem_Contig10
  Identity: Version: 3
    Name: CGC_name: Cre-cdh-1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE03080
      Molecular_name: CRE03080
        CRE03080.1
        RP32147
      Other_name: cr01.sctg5.wum.44
      Public_name: Cre-cdh-1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:45 WBPerson2970 Name_change: CGC_name: Cre-cdh-1
        3 03 Jul 2008 11:44:56 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE03080
                Other_name: cr01.sctg5.wum.44
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cdh
    RNASeq_FPKM: WBls:0000004 1.56873 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        1.9633 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        2.35787 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 1.06555 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        10.7168 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        6.39226 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        6.67648 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        7.46179 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        8.53132 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
      WBls:0000038 1.07895 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        2.13593 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        2.63548 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        2.69335 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 0.388966 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        0.439522 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        0.487867 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        0.551239 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        0.552786 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        0.614612 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        0.653118 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        0.732633 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
      WBls:0000063 0.277683 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
        0.278803 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        0.316593 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        0.369631 From_analysis: RNASeq.remanei.WBls:0000063.control_median
        0.460459 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        0.464766 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
        0.481713 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
        0.589867 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        0.612641 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
      WBls:0000101 0.601254 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        1.67396 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00150711
      00150712
      00150713
    Ortholog: WBGene00000395 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000396 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00019994 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00035878 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
      WBGene00090418 Pristionchus pacificus From_analysis: OMA
            WormBase-Compara
      WBGene00119227 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00139592 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00135127 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00151132 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00194150 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00127762 Caenorhabditis japonica From_analysis: TreeFam
      CBOVI.g4313 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g16065 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g845 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1837 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g8168 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g15523 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5905 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8216 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11486 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4948 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00202.g6891 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00202.g6907 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_16881.g25512 Caenorhabditis angaria From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18001 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00250.g7961 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_21243 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010873 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08554 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g7362 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30290500 Caenorhabditis inopinata From_analysis: WormBase-Compara
    Paralog (14)
    Structured_description: Automated_description: Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Is an ortholog of C. elegans cdh-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE03080
    Corresponding_transcript: CRE03080.1
    Other_sequence: CRC01112_1
      Tcir_isotig12335
      CR07801
  Experimental_info: Expr_pattern: Expr1110377
    Microarray_results: GPL14146_CRE03080_4109-4168_0.800_64_A
      GPL14146_CRE03080_5530-5589_0.847_17_B
      GPL14146_CRE03080_6731-6790_0.890_5_C
  Method: Gene