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WormBase Tree Display for Gene: WBGene00020421

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Name Class

WBGene00020421SMapS_parentSequenceT10E10
IdentityVersion2
NameCGC_namechtb-3Person_evidenceWBPerson1820
Sequence_nameT10E10.4
Molecular_nameT10E10.4a
T10E10.4a.1
CE53505
T10E10.4b
CE54436
T10E10.4b.1
Other_nameT10E10.bCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_T10E10.4Accession_evidenceNDBBX284606
Public_namechtb-3
DB_infoDatabaseAceViewgeneXG934
WormQTLgeneWBGene00020421
WormFluxgeneWBGene00020421
NDBlocus_tagCELE_T10E10.4
PanthergeneCAEEL|WormBase=WBGene00020421|UniProtKB=Q22378
familyPTHR34150
NCBIgene180906
RefSeqproteinNM_001404201.1
NM_001375049.2
TrEMBLUniProtAccQ22378
A0A8S4QGS8
UniProt_GCRPUniProtAccQ22378
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
204 Jan 2022 10:41:14WBPerson1983Name_changeCGC_namechtb-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classchtb
Allele (88)
RNASeq_FPKM (74)
GO_annotation00125052
OrthologWBGene00027590Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00164948Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00051530Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00089725Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00132856Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00225973Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2557Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g15666Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1950Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17401Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2658Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26570Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g251Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13638Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g16967Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g15750Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00079.g3645Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-T10E10.4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold626.g6464Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00918.g16740Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00378Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024556Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13871Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g13850Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0185100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19209Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239059Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00258018Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00299843Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00004156Caenorhabditis elegansFrom_analysisPanther
WBGene00008073Caenorhabditis elegansFrom_analysisPanther
WBGene00010573Caenorhabditis elegansFrom_analysisPanther
WBGene00019839Caenorhabditis elegansFrom_analysisPanther
WBGene00044016Caenorhabditis elegansFrom_analysisPanther
WBGene00021504Caenorhabditis elegansFrom_analysisPanther
WBGene00022445Caenorhabditis elegansFrom_analysisPanther
WBGene00235273Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionT10E10.4 encodes a large (966-residue) protein, predicted to besecreted, with two N-terminal chitin-binding peritrophin-A domainsfollowed by 14 cysteine-rich domains and one C-terminal EB module; thegeneral organization of T10E10.4 protein resembles that of K04H4.2;T10E10.4 has no obvious function in mass RNAi assays but, like CEJ-1 andCPG-2, might participate in chitin synthesis.Paper_evidenceWBPaper00028588
WBPaper00029231
WBPaper00029232
Curator_confirmedWBPerson567
Date_last_updated09 Apr 2007 00:00:00
Automated_descriptionPredicted to enable chitin binding activity.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST10E10.4a
T10E10.4b
Corresponding_CDS_historyT10E10.4:wp272
Corresponding_transcriptT10E10.4a.1
T10E10.4b.1
Other_sequenceJI166331.1
JI477601.1
JI170910.1
Associated_featureWBsf654061
WBsf670618
WBsf670619
WBsf1005552
WBsf1005553
WBsf1023089
WBsf237470
Experimental_info (7)
Map_infoMapXPosition-3.10406
PositivePositive_cloneT10E10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene