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WormBase Tree Display for Gene: WBGene00012261

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Name Class

WBGene00012261SMapS_parentSequenceCHROMOSOME_X
IdentityVersion2
Name (5)
DB_infoDatabaseAceViewgeneXL677
WormQTLgeneWBGene00012261
WormFluxgeneWBGene00012261
NDBlocus_tagCELE_W04G3.8
PanthergeneCAEEL|WormBase=WBGene00012261|UniProtKB=G5EEA2
familyPTHR37437
NCBIgene181295
RefSeqproteinNM_077448.6
TREEFAMTREEFAM_IDTF315575
TrEMBLUniProtAccG5EEA2
UniProt_GCRPUniProtAccG5EEA2
SpeciesCaenorhabditis elegans
HistoryVersion_change (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlpr
Allele (37)
StrainWBStrain00036906
WBStrain00035425
WBStrain00051076
RNASeq_FPKM (74)
GO_annotation00015714
00015715
OrthologWBGene00037115Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037114Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00058358Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00143040Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00125390Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00226448Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2591Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1601Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12191Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14454Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15901Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10071Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1373Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g20658Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19649Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6497Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00036.g2020Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lpr-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold515.g2640Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00025.g1448Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01202Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023700Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00490Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g23824Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0081420Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00241473Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00281847Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267880Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289705Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00002393Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012256Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00012257Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00020571Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionlpr-3 encodes one of seven C. elegans proteins related to the lipocalin family of structurally related, low molecular weight, secreted proteins that bind and transport lipophilic molecules and participate in intercellular signaling; large-scale RNAi experiments indicate that lpr-3 activity is required for normal growth rates, early larval development, and coordinated locomotion.Paper_evidenceWBPaper00005654
WBPaper00006395
WBPaper00024497
WBPaper00025054
WBPaper00032973
Curator_confirmedWBPerson1843
Date_last_updated16 Aug 2011 00:00:00
Automated_descriptionPredicted to be involved in lipid transport. Predicted to be located in extracellular region. Expressed in excretory system and vulva.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW04G3.8
Corresponding_transcriptW04G3.8.1
Other_sequence (47)
Associated_featureWBsf648513
WBsf663316
WBsf663317
WBsf1006895
WBsf1006896
WBsf1023805
WBsf1023806
WBsf236332
WBsf236333
WBsf236334
Experimental_infoRNAi_resultWBRNAi00114565Inferred_automaticallyRNAi_primary
WBRNAi00054787Inferred_automaticallyRNAi_primary
WBRNAi00036282Inferred_automaticallyRNAi_primary
WBRNAi00026489Inferred_automaticallyRNAi_primary
WBRNAi00117218Inferred_automaticallyRNAi_primary
WBRNAi00094213Inferred_automaticallyRNAi_primary
WBRNAi00009253Inferred_automaticallyRNAi_primary
Expr_patternExpr14485
Expr14486
Expr15948
Expr1026373
Expr1035431
Expr1158328
Expr2013261
Expr2031492
Drives_constructWBCnstr00030041
WBCnstr00040909
WBCnstr00040910
Construct_productWBCnstr00030041
WBCnstr00040910
Microarray_results (21)
Expression_cluster (384)
Interaction (108)
Map_infoMapXPosition2.85768
PositivePositive_cloneW04G3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00032973
WBPaper00048267
WBPaper00052189
WBPaper00052963
WBPaper00062109
WBPaper00062388
WBPaper00062715
WBPaper00063244
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene