WormBase Tree Display for Gene: WBGene00009731

WBGene00009731 SMap: S_parent: Sequence: F45G2
  Identity: Version: 2
    Name: CGC_name: exo-1 Person_evidence: WBPerson8161
      Sequence_name: F45G2.3
      Molecular_name: F45G2.3
        F45G2.3.1
        CE28728
      Other_name: CELE_F45G2.3 Accession_evidence: NDB BX284603
      Public_name: exo-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 23 Mar 2009 10:34:01 WBPerson9133 Name_change: CGC_name: exo-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: exo
    Allele (45)
    Strain: WBStrain00034463
      WBStrain00028633
      WBStrain00047360
    RNASeq_FPKM (74)
    GO_annotation (26)
    Contained_in_operon: CEOP3788
    Ortholog: WBGene00040054 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00061933 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00141588 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137980 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00230146 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12995 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g13112 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g4127 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1045 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6676 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19749 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g14940 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20981 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12426 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7588 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3593 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7881 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00016.g1069 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-exo-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold84.g516 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03145.g29216 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06232 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_06233 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_07651 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_008390 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_008392 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04661 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g8693 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30020500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g9350 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245533 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00281864 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00262761 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00287066 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002671 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000005559 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0015553 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2828 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:3511 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1349427 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1309465 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00000794 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019004 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020442 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: exo-1 encodes a 5'-3' exonuclease; by homology, EXO-1 is predicted to play a role in DNA metabolic processes, including recombination, double-strand break repair and DNA mismatch repair. Paper_evidence: WBPaper00037751
          Curator_confirmed: WBPerson1843
          Date_last_updated: 13 Apr 2011 00:00:00
      Automated_description: Predicted to enable 5'-3' DNA exonuclease activity and 5'-flap endonuclease activity. Predicted to be involved in DNA recombination and mismatch repair. Predicted to be located in nucleus. Is an ortholog of human EXO1 (exonuclease 1). Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F45G2.3
    Corresponding_CDS_history: F45G2.3:wp58
    Corresponding_transcript: F45G2.3.1
    Other_sequence (14)
    Associated_feature: WBsf645714
      WBsf994888
      WBsf226007
  Experimental_info: RNAi_result: WBRNAi00006004 Inferred_automatically: RNAi_primary
      WBRNAi00007873 Inferred_automatically: RNAi_primary
      WBRNAi00047436 Inferred_automatically: RNAi_primary
      WBRNAi00015041 Inferred_automatically: RNAi_primary
      WBRNAi00097145 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023799
      Expr1034257
      Expr1151277
      Expr2011396
      Expr2029632
    Drives_construct: WBCnstr00031959
    Construct_product: WBCnstr00031959
    Microarray_results (21)
    Expression_cluster (126)
    Interaction (109)
  Map_info: Map: III Position: 21.2134 Error: 6.3e-05
    Positive: Positive_clone: F45G2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (14)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene