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WormBase Tree Display for Gene: WBGene00006926

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Name Class

WBGene00006926SMapS_parentSequenceC42D8
IdentityVersion1
NameCGC_namevit-2Person_evidenceWBPerson71
Sequence_nameC42D8.2
Molecular_nameC42D8.2
C42D8.2.1
CE06950
Other_nameCELE_C42D8.2Accession_evidenceNDBBX284606
Public_namevit-2
DB_infoDatabaseWormQTLgeneWBGene00006926
WormFluxgeneWBGene00006926
NDBlocus_tagCELE_C42D8.2
PanthergeneCAEEL|WormBase=WBGene00006926|UniProtKB=P05690
familyPTHR23345
NCBIgene180781
RefSeqproteinNM_076467.7
SwissProtUniProtAccP05690
UniProt_GCRPUniProtAccP05690
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:43WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvit
Allele (95)
Legacy_informationStructural gene for vitellogenin yp170B.
[C.elegansII] NMK. 4.9 kb transcript, specific to adult hermaphrodite intestine, encodes vitellogenin yp170B (67% identity to VIT-5). Extensive promoter analysis. [Speith et al. 1985b; MacMorris et al. 1994; BL]
Strain (11)
RNASeq_FPKM (74)
GO_annotation00038891
00038892
00038893
00038894
00038895
00038896
00038897
00038898
00115036
00115037
OrthologWBGene00000365Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00051735Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00024796Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034777Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034800Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00035047Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00140283Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00137662Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00160603Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00077807Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00094952Pristionchus pacificusFrom_analysisOMA
WBGene00234370Brugia malayiFrom_analysisWormBase-Compara
CSP21.g1526Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g14641Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g17201Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g17203Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g17875Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g20401Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19018Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g20003Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15575Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g2849Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g1690Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g8348Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g2865Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19117Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g20849Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g20851Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_X.g24240Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g24851Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g24854Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold567.g4169Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00018.g1102Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00278.g8548Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00373.g10344Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00722.g14792Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_06527.g36659Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_06743.g36951Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00120Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_00565Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024365Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_024831Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00585Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07370Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07456Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g13472Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g13473Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g13513Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g13514Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g21845Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0209900Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_X0245200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19016Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00051276Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00246557Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00295080Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0265048Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
ZFIN:ZDB-GENE-991019-2Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-001201-4Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
ZFIN:ZDB-GENE-001201-5Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-001201-6Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-001201-2Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-091106-1Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-001201-3Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ParalogWBGene00006925Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00006927Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006928Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006929Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006930Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionvit-2 encodes the vitellogenin homolog YP170; vit-2 is expressed in the adult hermaphrodite intestine and VIT-2 is secreted into the pseudocoelomic space before being taken up by developing oocytes; vit-2 expression is regulated in a sex-, stage-, and tissue-specific manner by the ELT-2/GATA and MAB-3 transcription factors.Paper_evidenceWBPaper00003831
WBPaper00004538
WBPaper00032471
WBPaper00001864
WBPaper00003452
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated24 Mar 2014 00:00:00
Automated_descriptionPredicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Located in cytoplasmic vesicle; vesicle lumen; and yolk granule. Expressed in embryonic cell; gonad; intestine; oocyte; and pseudocoelom.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC42D8.2
Corresponding_CDS_historyC42D8.2:wp176
C42D8.2b:wp271
Corresponding_transcriptC42D8.2.1
Other_sequence (264)
Associated_feature (19)
Experimental_infoRNAi_resultWBRNAi00095269Inferred_automaticallyRNAi_primary
WBRNAi00042364Inferred_automaticallyRNAi_primary
WBRNAi00095273Inferred_automaticallyRNAi_primary
WBRNAi00063230Inferred_automaticallyRNAi_primary
WBRNAi00001993Inferred_automaticallyRNAi_primary
WBRNAi00063231Inferred_automaticallyRNAi_primary
Expr_patternExpr520
Expr11396
Expr12138
Expr12674
Expr16161
Expr1015447
Expr1032943
Expr1146349
Expr2018001
Expr2036137
Drives_construct (19)
Construct_productWBCnstr00000145
WBCnstr00012417
WBCnstr00018820
WBCnstr00021273
WBCnstr00022596
WBCnstr00034094
WBCnstr00041719
Regulate_expr_clusterWBPaper00051305:vit-2(ac3)_downregulated
WBPaper00051305:vit-2(ac3)_upregulated
AntibodyWBAntibody00000018
Microarray_results (21)
Expression_cluster (320)
Interaction (317)
Map_info (3)
Reference (114)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene