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WormBase Tree Display for Gene: WBGene00004995

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Name Class

WBGene00004995EvidenceAuthor_evidencePatthy L
Hodgkin JA
SMapS_parentSequenceC28C12
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classspp
Allele (45)
StrainWBStrain00032093
WBStrain00036036
WBStrain00036070
WBStrain00036142
WBStrain00036210
WBStrain00036330
WBStrain00036673
RNASeq_FPKM (74)
GO_annotation00113407
00113408
00113409
OrthologWBGene00037909Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00164255Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00143219Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00106795Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00129428Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00136617Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00073364Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00070895Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00095774Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00222707Brugia malayiFrom_analysisWormBase-Compara
CSP21.g7943Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2694Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10876Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g7579Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7963Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9032Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g9034Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8663Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g24186Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g30022Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4289Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_IV.g15341Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g15346Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g15347Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g15351Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g15353Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g15354Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20575Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00017.g1099Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00017.g1101Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_015331Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g9214Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40067510Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11089Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241306Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00266365Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0000416Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
ZFIN:ZDB-GENE-020108-1Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
Panther
ZFIN:ZDB-GENE-091204-378Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
Panther
HGNC:9498Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
Panther
SonicParanoid
HGNC:10801Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
HGNC:33131Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
Panther
SonicParanoid
MGI:97783Mus musculusFrom_analysisHieranoid
Inparanoid
Panther
MGI:109516Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
MGI:1924193Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
Panther
RGD:3423Rattus norvegicusFrom_analysisHieranoid
Inparanoid
Panther
RGD:621700Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
RGD:1307368Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
Panther
ParalogWBGene00004992Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004993Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004998Caenorhabditis elegansFrom_analysisPanther
WBGene00005000Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionspp-10 encodes two protein isoforms that are orthologous to the human gene PROSAPOSIN (PSAP; OMIM:176801, mutated in Gaucher disease and metachromatic leukodystrophy); SPP-10A and -10B are predicted to have 3 and 4 embedded saposin sequences, that are likely to be split into individual saposin peptides by proteolysis; in mammals, saposins activate the enzymes sphingomyelinphosphodiesterase and beta-glucosylceramidase; spp-10 has no obvious function in mass RNAi assays.Paper_evidenceWBPaper00013533
Curator_confirmedWBPerson1823
WBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be involved in sphingolipid metabolic process. Predicted to be located in lysosome. Human ortholog(s) of this gene implicated in several diseases, including cystic fibrosis; lung disease (multiple); and sphingolipidosis (multiple). Is an ortholog of human PSAP (prosaposin) and PSAPL1 (prosaposin like 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (22)
Molecular_infoCorresponding_CDSC28C12.7a
C28C12.7b
Corresponding_transcriptC28C12.7a.1
C28C12.7b.1
Other_sequence (32)
Associated_featureWBsf646166
WBsf718141
WBsf997226
WBsf228682
WBsf228683
WBsf228684
Experimental_infoRNAi_resultWBRNAi00011295Inferred_automaticallyRNAi_primary
WBRNAi00041403Inferred_automaticallyRNAi_primary
WBRNAi00011296Inferred_automaticallyRNAi_primary
WBRNAi00075913Inferred_automaticallyRNAi_primary
WBRNAi00041404Inferred_automaticallyRNAi_primary
WBRNAi00029297Inferred_automaticallyRNAi_primary
Expr_patternExpr5367
Expr1019104
Expr1032485
Expr1145434
Expr2016065
Expr2034301
Drives_constructWBCnstr00003963
WBCnstr00035283
Construct_productWBCnstr00035283
Microarray_results (33)
Expression_cluster (185)
Interaction (17)
Map_infoMapIVPosition3.83716Error0.002099
PositivePositive_cloneC28C12Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point5118
Pseudo_map_position
ReferenceWBPaper00024209
WBPaper00025032
WBPaper00025088
WBPaper00025190
WBPaper00038491
WBPaper00048489
WBPaper00055090
WBPaper00065937
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene