WormBase Tree Display for Gene: WBGene00004502

WBGene00004502 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F29G9
  Identity: Version: 1
    Name: CGC_name: rpt-2 Person_evidence: WBPerson1551
      Sequence_name: F29G9.5
      Molecular_name: F29G9.5
        F29G9.5.1
        CE09799
      Other_name: CELE_F29G9.5 Accession_evidence: NDB BX284605
      Public_name: rpt-2
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpt
    Allele (33)
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog: WBGene00058832 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00030882 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00150930 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00125192 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00053785 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00208885 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00164818 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00223962 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1082 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1562 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21339 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g6318 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17805 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g1137 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17267 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g14119 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2922 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24547 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00225.g7379 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00225.g7380 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rpt-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold491.g2077 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00241.g7776 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17156 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017853 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05599 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20634 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50205300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g14359 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243441 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00280472 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00280475 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00255892 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288417 Trichuris muris From_analysis: WormBase-Compara
      WBGene00291324 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296382 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002165 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0015282 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-8730 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040625-69 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9547 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:106054 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621097 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00004501 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004503 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004504 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015688 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004506 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018991 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004505 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Enables ubiquitin protein ligase binding activity. Involved in negative regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, base subcomplex. Expressed in head. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with poor growth, spastic tetraplegia, and hearing loss. Is an ortholog of human PSMC1 (proteasome 26S subunit, ATPase 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0081324 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9547)
  Molecular_info: Corresponding_CDS: F29G9.5
    Corresponding_transcript: F29G9.5.1
    Other_sequence (154)
    Associated_feature: WBsf652671
      WBsf652672
      WBsf233748
  Experimental_info: RNAi_result: WBRNAi00063265 Inferred_automatically: RNAi_primary
      WBRNAi00078752 Inferred_automatically: RNAi_primary
      WBRNAi00095597 Inferred_automatically: RNAi_primary
      WBRNAi00008197 Inferred_automatically: RNAi_primary
      WBRNAi00031591 Inferred_automatically: RNAi_primary
      WBRNAi00111148 Inferred_automatically: RNAi_primary
      WBRNAi00095200 Inferred_automatically: RNAi_primary
      WBRNAi00022818 Inferred_automatically: RNAi_primary
      WBRNAi00045946 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram756
      Expr5917
      Expr1014406
      Expr1032304
      Expr1149843
      Expr2015535
      Expr2033770
    Drives_construct: WBCnstr00002445
      WBCnstr00035440
    Construct_product: WBCnstr00035440
    Microarray_results (20)
    Expression_cluster (157)
    Interaction (254)
  Map_info: Map: V Position: -0.454333 Error: 0.003283
    Positive: Positive_clone: F29G9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026640
    WBPaper00026844
    WBPaper00029221
    WBPaper00029296
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00056008
    WBPaper00060685
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene