WormBase Tree Display for Gene: WBGene00004347
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| WBGene00004347 | SMap | S_parent | Sequence | Y38E10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rgs-4 | Person_evidence | WBPerson330 | |||||
| Sequence_name | Y38E10A.21 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_Y38E10A.21 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rgs-4 | ||||||||
| DB_info | Database | AceView | gene | 2M957 | |||||
| WormQTL | gene | WBGene00004347 | |||||||
| WormFlux | gene | WBGene00004347 | |||||||
| NDB | locus_tag | CELE_Y38E10A.21 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004347|UniProtKB=H2KMK7 | |||||||
| family | PTHR10845 | ||||||||
| NCBI | gene | 189666 | |||||||
| RefSeq | protein | NM_001381631.1 | |||||||
| NM_001377886.2 | |||||||||
| NM_001267421.4 | |||||||||
| NM_001373807.2 | |||||||||
| TrEMBL | UniProtAcc | H2KMK5 | |||||||
| A0A5S9MNH1 | |||||||||
| A0A486WXG8 | |||||||||
| H2KMK7 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A5S9MNH1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 03 Dec 2004 16:28:54 | WBPerson2970 | Event | Acquires_merge | WBGene00012599 | ||||
| 3 | 21 Nov 2019 16:12:41 | WBPerson4025 | Event | Acquires_merge | WBGene00012598 | ||||
| Acquires_merge (2) | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rgs | ||||||||
| Allele (540) | |||||||||
| Strain | WBStrain00026366 | ||||||||
| WBStrain00031678 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00059606 | Caenorhabditis remanei | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00031745 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
| OrthoMCL | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00151582 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00129549 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00148896 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00147994 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00051966 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| WBGene00132514 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
| WBGene00113522 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00059605 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WBGene00156291 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WBGene00209479 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| CBOVI.g6323 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP21.g15518 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| CSP26.g14925 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g15922 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g13112 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g16953 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g16038 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g14310 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g3921 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g3909 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_00811.g14302 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cni-rgs-4 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold629.g14953 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00647.g13980 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_16919 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_007140 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| OTIPU.nOt.2.0.1.g12568 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
| Sp34_20032100 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g6236 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | rgs-4 encodes a regulator of G protein signaling; by homology, RGS-4 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling; loss of rgs-4 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-4 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability; the RGS-4 expression pattern has not yet been reported. | Paper_evidence | WBPaper00004281 | |||||
| WBPaper00024480 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 07 Feb 2005 00:00:00 | ||||||||
| Automated_description | Enriched in head mesodermal cell; neurons; and ventral nerve cord based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; glp-1; and eat-2 based on tiling array; microarray; and RNA-seq studies. Is affected by thirteen chemicals including stavudine; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: RGS domain; RGS domain superfamily; Regulator of G protein signaling domain; and RGS, subdomain 2. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38E10A.21a | |||||||
| Y38E10A.21b | |||||||||
| Y38E10A.21c | |||||||||
| Y38E10A.21d | |||||||||
| Corresponding_CDS_history | Y38E10A.21:wp229 | ||||||||
| Y38E10A.21a:wp274 | |||||||||
| Corresponding_transcript | Y38E10A.21a.1 | ||||||||
| Y38E10A.21b.1 | |||||||||
| Y38E10A.21c.1 | |||||||||
| Y38E10A.21d.1 | |||||||||
| Other_sequence (36) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020288 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056020 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020287 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056021 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram882 | ||||||||
| Chronogram1470 | |||||||||
| Expr1022441 | |||||||||
| Expr1027927 | |||||||||
| Expr1032165 | |||||||||
| Expr1159539 | |||||||||
| Expr1159540 | |||||||||
| Expr2007301 | |||||||||
| Expr2015327 | |||||||||
| Expr2033561 | |||||||||
| Drives_construct | WBCnstr00004337 | ||||||||
| Microarray_results (35) | |||||||||
| Expression_cluster (131) | |||||||||
| Map_info | Map | II | Position | 10.6551 | Error | 0.037636 | |||
| Positive | Positive_clone | Y38E10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4624 | |||||||
| 4673 | |||||||||
| 5028 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004281 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
