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WormBase Tree Display for Gene: WBGene00004189

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Name Class

WBGene00004189SMapS_parentSequenceT20H4
IdentityVersion2
NameCGC_namepars-1Person_evidenceWBPerson36
WBPerson10953
Sequence_nameT20H4.3
Molecular_nameT20H4.3a
T20H4.3a.1
CE00748
T20H4.3b
CE37410
T20H4.3b.1
Other_nameprs-1
CELE_T20H4.3Accession_evidenceNDBBX284603
Public_namepars-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
229 Jan 2010 14:16:16WBPerson2970Name_changeCGC_namepars-1
Other_nameprs-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpars
Allele (15)
RNASeq_FPKM (74)
GO_annotation (16)
OrthologWBGene00066457Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00042330Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00157175Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00134340Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00053690Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00062665Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00080073Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00164382Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00098841Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00231736Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4224Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4528Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6895Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9505Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15358Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g3004Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1215Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g2397Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1211Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29982Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1460Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-pars-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19584Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00463.g11707Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21684Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_008632Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13096Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g3871Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30285000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8118Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00212458Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00248651Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00304743Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00262825Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000001062Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:3418Homo sapiensFrom_analysisOrthoFinder
Panther
PhylomeDB
ParalogWBGene00000659Caenorhabditis elegansFrom_analysisTreeFam
WBGene00001337Caenorhabditis elegansFrom_analysisPanther
WBGene00004190Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006617Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044344Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionprs-1 encodes a predicted cytoplasmic prolyl-tRNA synthetase (ProRS), a class II aminoacyl-tRNA synthetase that catalyzes the attachment of proline to its cognate tRNA and is thus required for protein biosynthesis; PRS-1 is required for embryonic, germline, and postembryonic development.Paper_evidenceWBPaper00004403
WBPaper00004651
WBPaper00005654
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable proline-tRNA ligase activity. Predicted to be involved in prolyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Predicted to be part of aminoacyl-tRNA synthetase multienzyme complex. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 15. Is an ortholog of human EPRS1 (glutamyl-prolyl-tRNA synthetase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0070398Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:3418)
Molecular_infoCorresponding_CDS (2)
Corresponding_CDS_historyT20H4.3:wp130
Corresponding_transcriptT20H4.3a.1
T20H4.3b.1
Other_sequence (103)
Associated_feature (12)
Experimental_infoRNAi_result (17)
Expr_patternExpr1028773
Expr1032049
Expr1157227
Expr2014738
Expr2032972
Drives_constructWBCnstr00037929
Construct_productWBCnstr00037929
Microarray_results (24)
Expression_cluster (112)
Interaction (277)
Map_infoMapIIIPosition-0.766312Error0.000666
PositivePositive_cloneT20H4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00035228
WBPaper00038491
WBPaper00055090
WBPaper00057218
RemarkConnection made from predicted gene which has synthetase Pfam domain similarity. [sdm 12/01]
dl1 : porbably cytoplasmic
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene