WormBase Tree Display for Gene: WBGene00001986

WBGene00001986 SMap: S_parent: Sequence: F43D2
  Identity: Version: 1
    Name: CGC_name: hot-1 Person_evidence: WBPerson42
      Sequence_name: F43D2.4
      Molecular_name (6)
      Other_name: CELE_F43D2.4 Accession_evidence: NDB BX284605
      Public_name: hot-1
    DB_info: Database: AceView gene 5P107
        WormQTL gene WBGene00001986
        WormFlux gene WBGene00001986
        NDB locus_tag CELE_F43D2.4
        Panther gene CAEEL|WormBase=WBGene00001986|UniProtKB=G5EF85
          family PTHR34722
        NCBI gene 179966
        RefSeq protein NM_171552.4
            NM_001136425.3
        TREEFAM TREEFAM_ID TF315944
        TrEMBL UniProtAcc B5U8P6
            G5EF85
        UniProt_GCRP UniProtAcc G5EF85
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hot
    Allele (313)
    RNASeq_FPKM (74)
    GO_annotation: 00006241
      00006242
      00006243
      00006244
    Ortholog: WBGene00064401 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00027215 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00156380 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00138536 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00193009 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00102062 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00225725 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1637 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g16227 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1165 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5414 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21611 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g22496 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5448 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2518 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g22257 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g30068 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g23658 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00210.g7075 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-hot-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19868 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00380.g10445 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11941 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017471 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05303 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12631 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50350900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g16572 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243434 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00258331 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290140 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296459 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00003849 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001989 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00020489 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001988 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00044484 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00001990 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001987 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: hot-1 encodes a predicted paralog of ODR-2 and contains a Ly-6 domain; may be expressed in neurons. Paper_evidence: WBPaper00004498
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F43D2.4a
      F43D2.4b
    Corresponding_transcript: F43D2.4a.1
      F43D2.4b.1
    Other_sequence (12)
    Associated_feature (16)
  Experimental_info: RNAi_result: WBRNAi00047186 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014231
      Expr1031155
      Expr1151046
      Expr2012539
      Expr2030778
    Drives_construct: WBCnstr00036539
    Construct_product: WBCnstr00036539
    Microarray_results (17)
    Expression_cluster (103)
  Map_info: Map: V Position: 6.5541 Error: 0.003732
    Positive: Positive_clone: F43D2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004498
  Remark: Sequence connection from [Chou JH, Bargmann CI, Sengupta P]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene