WormBase Tree Display for Gene: WBGene00000777

WBGene00000777 SMap: S_parent: Sequence: F43G9
  Identity: Version: 1
    Name: CGC_name: cpn-1 Person_evidence: WBPerson268
      Sequence_name: F43G9.9
      Molecular_name: F43G9.9
        F43G9.9.1
        CE10370
        F43G9.9.2
      Other_name: CELE_F43G9.9 Accession_evidence: NDB BX284601
      Public_name: cpn-1
    DB_info: Database: AceView gene 1J212
        WormQTL gene WBGene00000777
        WormFlux gene WBGene00000777
        NDB locus_tag CELE_F43G9.9
        Panther gene CAEEL|WormBase=WBGene00000777|UniProtKB=G5EFB5
          family PTHR18959
        NCBI gene 172660
        RefSeq protein NM_001383488.2
        TrEMBL UniProtAcc G5EFB5
        UniProt_GCRP UniProtAcc G5EFB5
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cpn
    Allele (23)
    Legacy_information: [Metzstein M] cpn for CalPoNin family. No mutants known.
    RNASeq_FPKM (74)
    GO_annotation: 00017780
      00017781
      00017782
    Ortholog: WBGene00060094 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033441 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00162625 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00148319 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00122476 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00178953 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00159661 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00131242 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00064707 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00101020 Pristionchus pacificus From_analysis: OMA
            WormBase-Compara
      WBGene00231502 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9665 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9871 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g12426 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1735 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g2280 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8268 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7689 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10751 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2441 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24325 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00476.g11282 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-cpn-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20464 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_07640.g37993 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07068 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002623 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05046 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05924 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g18306 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10313300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1634 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237446 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263351 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00293742 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005894 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoInspector
      FB:FBgn0035499 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-020802-2 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            SonicParanoid
      ZFIN:ZDB-GENE-060531-53 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            SonicParanoid
      ZFIN:ZDB-GENE-070912-1 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            SonicParanoid
    Paralog: WBGene00006819 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020808 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000778 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019361 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016898 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000779 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000780 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: cpn-1 encodes a calponin homolog, more closely related to calponin per se than to its paralogs transgelin (SM22 alpha) or neuronal protein NP25, that is is dispensable for viability and gross morphology in mass RNAi screens, and that has no obvious mutant phenotype in a rearrangement that probably disrupts cpn-1. Paper_evidence: WBPaper00003698
            WBPaper00012852
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Predicted to be located in actin cytoskeleton. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F43G9.9
    Corresponding_transcript: F43G9.9.1
      F43G9.9.2
    Other_sequence (90)
    Associated_feature: WBsf649404
      WBsf219954
  Experimental_info (7)
  Map_info: Map: I Position: 3.01302 Error: 0.000293
    Positive: Positive_clone: F43G9 Person_evidence: WBPerson1274
          Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003698
    WBPaper00024200
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene