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WormBase Tree Display for Gene: WBGene00004256

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Name Class

WBGene00004256EvidencePerson_evidenceWBPerson345
SMapS_parentSequenceZK994
IdentityVersion2
NameCGC_namepxn-1Person_evidenceWBPerson345
Sequence_nameZK994.3
Molecular_nameZK994.3
ZK994.3.1
CE40298
Other_nameCELE_ZK994.3Accession_evidenceNDBBX284605
Public_namepxn-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
226 May 2006 16:35:34WBPerson1849EventAcquires_mergeWBGene00022841
Acquires_mergeWBGene00022841
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpxn
Allele (85)
StrainWBStrain00031626
WBStrain00050780
RNASeq_FPKM (74)
GO_annotation (19)
OrthologWBGene00053095Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00024751Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00037136Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00143891Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00100463Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00163489Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00136416Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00227866Brugia malayiFrom_analysisWormBase-Compara
WBGene00231273Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2158Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1147Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3071Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8827Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g5604Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26201Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1086Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1536Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13764Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g18617Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g7381Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g2856Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00106.g4493Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00106.g4494Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00106.g4500Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_11459.g23249Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-pxn-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g22300Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00220.g7337Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17020Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018855Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00383Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9134Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50114200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15000Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241715Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00243881Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00112475Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00272734Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00258032Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285492Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0011828Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-030131-9460Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
HGNC:6678Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
HGNC:7218Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
HGNC:14966Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:3423Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
HGNC:26359Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:107569Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
MGI:97137Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
MGI:1916925Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1923363Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
RGD:1310051Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
RGD:1592081Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
RGD:1311882Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
RGD:1560694Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00004257Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00009897Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00022743Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00015841Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00017968Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00019970Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00008627Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00019613Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00016700Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011530Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable peroxidase activity. Involved in muscle attachment and positive regulation of axon guidance. Located in basement membrane. Expressed in several structures, including egg-laying apparatus; excretory cell; intestine; somatic nervous system; and spermathecal-uterine valve cell. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease 1; asthma (multiple); kidney failure (multiple); and lung disease (multiple). Is an ortholog of human PXDN (peroxidasin) and PXDNL (peroxidasin like).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (21)
Molecular_infoCorresponding_CDSZK994.3
Corresponding_CDS_historyZK994.3:wp112
ZK994.3:wp159
Corresponding_transcriptZK994.3.1
Other_sequence (12)
Associated_feature (18)
Experimental_infoRNAi_resultWBRNAi00059883Inferred_automaticallyRNAi_primary
WBRNAi00022255Inferred_automaticallyRNAi_primary
WBRNAi00038524Inferred_automaticallyRNAi_primary
WBRNAi00022256Inferred_automaticallyRNAi_primary
WBRNAi00038525Inferred_automaticallyRNAi_primary
WBRNAi00059882Inferred_automaticallyRNAi_primary
Expr_patternExpr12146
Expr12147
Expr1018057
Expr1032099
Expr1163304
Expr2015200
Expr2033434
Drives_constructWBCnstr00020277
WBCnstr00020279
WBCnstr00035607
Construct_productWBCnstr00020279
WBCnstr00035607
Microarray_results (24)
Expression_cluster (163)
Interaction (49)
Map_infoMapVPosition1.43195Error0.002031
PositivePositive_cloneZK994Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4596
Pseudo_map_position
ReferenceWBPaper00027214
WBPaper00033518
WBPaper00037647
WBPaper00038491
WBPaper00041570
WBPaper00043642
WBPaper00046086
WBPaper00047130
WBPaper00047921
WBPaper00047922
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene