WormBase Tree Display for Gene: WBGene00013880

WBGene00013880 SMap: S_parent: Sequence: ZC410
  Identity: Version: 2
    Name: CGC_name: mppb-1 Paper_evidence: WBPaper00027699
      Sequence_name: ZC410.2
      Molecular_name: ZC410.2
        ZC410.2.1
        CE35701
      Other_name: CELE_ZC410.2 Accession_evidence: NDB BX284604
      Public_name: mppb-1
    DB_info: Database (14)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 28 Jul 2006 09:59:16 WBPerson2970 Name_change: CGC_name: mppb-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mppb
    Allele (29)
    RNASeq_FPKM (74)
    GO_annotation (16)
    Ortholog: WBGene00040453 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00139496 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00063890 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00055642 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00164613 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00134872 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
      WBGene00138198 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00098409 Pristionchus pacificus From_analysis: OMA
      WBGene00234055 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g8156 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3296 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g20011 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19231 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4050 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26693 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12362 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3605 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g3606 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g3614 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4475 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g15809 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g4365 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19899 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00852.g14558 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-mppb-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10850 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00674.g14280 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16539 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_013348 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03075 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12003 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40351420 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11228 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00127578 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00211462 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00241043 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00259769 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302765 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004153 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0038271 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1792 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-050220-10 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:12585 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:9119 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:107876 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1920328 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621297 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1303314 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00022159 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018963 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00011679 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00012158 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013492 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015360 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015481 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018426 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020757 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Contributes to metalloendopeptidase activity. Involved in proteolysis. Part of mitochondrial processing peptidase complex. Human ortholog(s) of this gene implicated in Alzheimer's disease and multiple mitochondrial dysfunctions syndrome 6. Is an ortholog of human PMPCB (peptidase, mitochondrial processing subunit beta). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:10652 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12585)
      DOID:0070332 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9119)
  Molecular_info: Corresponding_CDS: ZC410.2
    Corresponding_CDS_history: ZC410.2:wp109
    Corresponding_transcript: ZC410.2.1
    Other_sequence: Dviv_isotig22891
      EX556850.1
      Acan_isotig07618
      Oden_isotig06906
      TSC02472_1
      HSC01228_1
      TSC12041_1
      GO249977.1
      Oden_isotig06904
      Oden_isotig06915
      JI473935.1
      FC542707.1
      HGC08043_1
      ACC00408_1
      JO468162.1
      SSC02077_1
      Oden_isotig06912
      AW980237.1
      Oden_isotig06911
      SR02445
      FE918695.1
      ASC03951_1
      AS01785
      ES570305.1
      Oden_isotig06909
      Oden_isotig06905
      TS00872
      OVC05682_1
      FE913124.1
      EX547333.1
      Oden_isotig06914
      PPC20971_1
      Tcir_isotig16334
      FC541156.1
      EX557427.1
      Oden_isotig06908
      FE919388.1
      JI171388.1
      CBC04830_1
      BMC00434_1
      HG04287
      HG09898
      Oden_isotig06913
      ASC02137_1
      SS00511
      FC815573.1
      Hbac_isotig01949
      EX500078.1
      SRC01633_1
      ES565101.1
      CRC10129_1
      AS07875
      ACC29793_1
      BG809103.1
      FK800956.1
      Oden_isotig06910
      Oden_isotig06907
      HS00901
    Associated_feature: WBsf655035
      WBsf228779
  Experimental_info: RNAi_result: WBRNAi00111775 Inferred_automatically: RNAi_primary
      WBRNAi00021682 Inferred_automatically: RNAi_primary
      WBRNAi00102818 Inferred_automatically: RNAi_primary
      WBRNAi00058893 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1010913
      Expr1036210
      Expr1162329
      Expr2013670
      Expr2031904
    Drives_construct: WBCnstr00029479
    Construct_product: WBCnstr00029479
    Antibody: WBAntibody00001111
    Microarray_results (20)
    Expression_cluster (111)
    Interaction (126)
  Map_info: Map: IV Position: 4.02417 Error: 0.001342
    Positive: Positive_clone: ZC410 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027699
    WBPaper00030701
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene