WormBase Tree Display for Gene: WBGene00022159
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| WBGene00022159 | SMap | S_parent | Sequence | Y71G12B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mppa-1 | Paper_evidence | WBPaper00027699 | |||||
| Sequence_name | Y71G12B.24 | ||||||||
| Molecular_name | Y71G12B.24a | ||||||||
| Y71G12B.24a.1 | |||||||||
| CE48095 | |||||||||
| Y71G12B.24b | |||||||||
| CE49612 | |||||||||
| Y71G12B.24b.1 | |||||||||
| Other_name | CELE_Y71G12B.24 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | mppa-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Jul 2006 09:57:21 | WBPerson2970 | Name_change | CGC_name | mppa-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mppa | ||||||||
| Allele (443) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089114 | ||||||||
| 00089115 | |||||||||
| 00089116 | |||||||||
| 00089117 | |||||||||
| 00089118 | |||||||||
| 00089119 | |||||||||
| 00089120 | |||||||||
| 00089121 | |||||||||
| 00126335 | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00013880 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00018963 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011679 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012158 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013492 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015360 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015481 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018426 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020757 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Contributes to metalloendopeptidase activity. Involved in proteolysis. Part of mitochondrial processing peptidase complex. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 2. Is an ortholog of human PMPCA (peptidase, mitochondrial processing subunit alpha). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080061 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18667) | ||||
| Molecular_info | Corresponding_CDS | Y71G12B.24a | |||||||
| Y71G12B.24b | |||||||||
| Corresponding_CDS_history | Y71G12B.24:wp236 | ||||||||
| Corresponding_transcript | Y71G12B.24a.1 | ||||||||
| Y71G12B.24b.1 | |||||||||
| Other_sequence (52) | |||||||||
| Associated_feature | WBsf218988 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00117122 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00102819 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058211 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028092 | ||||||||
| Expr1039763 | |||||||||
| Expr1161627 | |||||||||
| Expr2013669 | |||||||||
| Expr2031903 | |||||||||
| Antibody | WBAntibody00001110 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (124) | |||||||||
| Interaction (42) | |||||||||
| Map_info | Map | I | Position | -13.0232 | Error | 0.046413 | |||
| Positive | Positive_clone | Y71G12B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027699 | ||||||||
| WBPaper00030701 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048759 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
